183 lines
4.0 KiB
YAML
183 lines
4.0 KiB
YAML
microscopes:
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BTMesoSPIM:
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daq:
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hardware:
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type: NI
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sample_rate: 100000
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# triggers
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master_trigger_out_line: PCI6738/port0/line1 #3
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camera_trigger_out_line: /PCI6738/ctr0 #9/42
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trigger_source: /PCI6738/PFI0 #4
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# Digital Laser Outputs
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laser_port_switcher: PCI6738/port0/line0
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laser_switch_state: False
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camera:
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hardware:
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type: HamamatsuOrca
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serial_number: 003209
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defect_correct_mode: 2.0 #2.0
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delay: 10 #ms
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settle_down: 0.0 #ms
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flip_x: True
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flip_y: False
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remote_focus_device:
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hardware:
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name: remote_focus
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type: NI # SyntheticRemoteFocus #EquipmentSolutions # NI
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channel: PCI6738/ao2 #45/46
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port: COM7
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min: 0
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max: 5
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galvo:
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-
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hardware:
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type: NI
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channel: PCI6738/ao0 #10/11
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min: -5
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max: 5
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waveform: sawtooth
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phase: 1.57079 # pi/2
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filter_wheel:
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hardware:
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type: ASI #SyntheticFilterWheel #SutterFilterWheel
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wheel_number: 0
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port: COM8
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baudrate: 115200
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filter_wheel_delay: .030 # in seconds
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available_filters:
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525-30: 0
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600-37: 1
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647LP: 2
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Empty1: 3
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Empty2: 4
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670-30: 5
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Blocked2: 6
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Empty3: 7
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Blocked3: 8
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Blocked4: 9
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stage:
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hardware:
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-
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type: ASI
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serial_number: 0000
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port: COM8
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timeout: 0.25
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baudrate: 115200
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axes: [x, y, z, f, theta]
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feedback_alignment: [88, 91, 91, 91, 85]
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axes_mapping: [X, V, Z, Y, T]
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volts_per_micron: None
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axes_channels: None
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max: 5
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min: 0
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joystick_axes: [x, y, z, theta, f]
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x_max: 125000
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x_min: -125000
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y_max: 125000
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y_min: -125000
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z_max: 50000
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z_min: -50000
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f_max: 1000000
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f_min: -1000000
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theta_max: 360000
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theta_min: -360000
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flip_x: False
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flip_y: False
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flip_z: False
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x_offset: 0
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y_offset: 0
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z_offset: 0
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theta_offset: 0
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f_offset: 0
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zoom:
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hardware:
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type: SyntheticZoom
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servo_id: 1
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port: COM18
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baudrate: 9600
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position:
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5X: 0
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4X: 0
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pixel_size:
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5X: 1.2 # 1.2 in BABB
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4X: 1.3 # 1.3 in BABB
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stage_positions:
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BABB:
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f:
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5X: 0
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4X: 0
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shutter:
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hardware:
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type: SyntheticShutter
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channel: PCI6738/port0/line10
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min: 0
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max: 5
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lasers:
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- wavelength: 488
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onoff:
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hardware:
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type: NI
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channel: PCI6738/port1/line5 # 7/41
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min: 0
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max: 5
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power:
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hardware:
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type: NI
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channel: PCI6738/ao8 # 1 # 44/11
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min: 0
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max: 5
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type: Obis
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- wavelength: 561
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onoff:
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hardware:
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type: NI
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channel: PCI6738/port1/line2 # 5/39
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min: 0
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max: 5
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power:
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hardware:
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type: NI
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channel: PCI6738/ao9 # 3 # 12/46
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min: 0
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max: 5
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type: Obis
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- wavelength: 638
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onoff:
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hardware:
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type: NI
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channel: PCI6738/port1/line3 # 6/39
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min: 0
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max: 5
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power:
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hardware:
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type: NI
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channel: PCI6738/ao10 # 4 # 13/14
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min: 0
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max: 5
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type: Obis
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gui:
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channels:
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count: 5
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# BDVParameters:
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# # The following parameters are used to configure the BigDataViewer
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# # visualization. See the BigDataViewer documentation for more details.
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# # https://imagej.net/BigDataViewer
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# shear:
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# shear_data: True
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# shear_dimension: YZ # XZ, YZ, or XY
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# shear_angle: 45
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# rotate:
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# rotate_data: False
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# rotate_dimension: X # X, Y, Z
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# rotate_angle: 0
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