microscopes:
  BTMesoSPIM:
    daq:
      hardware:
        type: NI
      sample_rate: 100000

      # triggers
      master_trigger_out_line: PCI6738/port0/line1 #3
      camera_trigger_out_line: /PCI6738/ctr0 #9/42
      trigger_source: /PCI6738/PFI0 #4

      # Digital Laser Outputs
      laser_port_switcher: PCI6738/port0/line0
      laser_switch_state: False

    camera:
      hardware:
        type: HamamatsuOrca
        serial_number: 003209
      defect_correct_mode: 2.0 #2.0
      delay: 10 #ms
      settle_down: 0.0 #ms
      flip_x: True
      flip_y: False
    remote_focus_device:
      hardware:
        name: remote_focus
        type: NI # SyntheticRemoteFocus #EquipmentSolutions # NI
        channel: PCI6738/ao2  #45/46
        port: COM7
        min: 0
        max: 5
    galvo:
      -
        hardware:
          type: NI
          channel: PCI6738/ao0  #10/11
          min: -5
          max: 5
        waveform: sawtooth
        phase: 1.57079 # pi/2

    filter_wheel:
      hardware:
        type: ASI #SyntheticFilterWheel #SutterFilterWheel
        wheel_number: 0
        port: COM8
        baudrate: 115200
      filter_wheel_delay: .030 # in seconds
      available_filters:
        525-30: 0
        600-37: 1
        647LP: 2
        Empty1: 3
        Empty2: 4
        670-30: 5
        Blocked2: 6
        Empty3: 7
        Blocked3: 8
        Blocked4: 9
    stage:
      hardware:
        -
          type: ASI
          serial_number: 0000
          port: COM8
          timeout: 0.25
          baudrate: 115200
          axes: [x, y, z, f, theta]
          feedback_alignment: [88, 91, 91, 91, 85]
          axes_mapping: [X, V, Z, Y, T]
          volts_per_micron: None
          axes_channels: None
          max: 5
          min: 0

      joystick_axes: [x, y, z, theta, f]
      x_max: 125000
      x_min: -125000
      y_max: 125000
      y_min: -125000
      z_max: 50000
      z_min: -50000
      f_max: 1000000
      f_min: -1000000
      theta_max: 360000
      theta_min: -360000

      flip_x: False
      flip_y: False
      flip_z: False

      x_offset: 0
      y_offset: 0
      z_offset: 0
      theta_offset: 0
      f_offset: 0
    zoom:
      hardware:
        type: SyntheticZoom
        servo_id: 1
        port: COM18
        baudrate: 9600
      position:
        5X: 0
        4X: 0
      pixel_size:
        5X: 1.2  # 1.2 in BABB
        4X: 1.3  # 1.3 in BABB
      stage_positions:
        BABB:
          f:
            5X: 0
            4X: 0
    shutter:
      hardware:
        type: SyntheticShutter
        channel: PCI6738/port0/line10
        min: 0
        max: 5
    lasers:
      - wavelength: 488
        onoff:
          hardware:
            type: NI
            channel: PCI6738/port1/line5 # 7/41
            min: 0
            max: 5
        power:
          hardware:
            type: NI
            channel: PCI6738/ao8 # 1  # 44/11
            min: 0
            max: 5
        type: Obis
      - wavelength: 561
        onoff:
          hardware:
            type: NI
            channel: PCI6738/port1/line2 # 5/39
            min: 0
            max: 5
        power:
          hardware:
            type: NI
            channel: PCI6738/ao9 # 3  # 12/46
            min: 0
            max: 5
        type: Obis
      - wavelength: 638
        onoff:
          hardware:
            type: NI
            channel: PCI6738/port1/line3 # 6/39
            min: 0
            max: 5
        power:
          hardware:
            type: NI
            channel: PCI6738/ao10 # 4  # 13/14
            min: 0
            max: 5
        type: Obis

gui:
  channels:
    count: 5


# BDVParameters:
# # The following parameters are used to configure the BigDataViewer
#   # visualization. See the BigDataViewer documentation for more details.
#   # https://imagej.net/BigDataViewer
#   shear:
#     shear_data: True
#     shear_dimension: YZ # XZ, YZ, or XY
#     shear_angle: 45
#   rotate:
#     rotate_data: False
#     rotate_dimension: X # X, Y, Z
#     rotate_angle: 0