244 lines
5.6 KiB
YAML
244 lines
5.6 KiB
YAML
# Only one microscope can be active in the GUI at a time, but all microscopes will be accessible
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microscopes:
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CTASLMv2:
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daq:
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hardware:
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type: NI
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sample_rate: 100000
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# triggers
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master_trigger_out_line: PCI6738/port0/line1 #3
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camera_trigger_out_line: /PCI6738/ctr0 #9/42
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trigger_source: /PCI6738/PFI0 #4
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camera:
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# -
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hardware:
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type: HamamatsuOrca
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serial_number: 100803
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defect_correct_mode: 2.0
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delay: 20 #ms
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settle_down: 0.0 #ms
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# -
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# hardware:
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# name: camera
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# type: HamamatsuOrca
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# serial_number: 003054
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# x_pixels: 2048.0
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# y_pixels: 2048.0
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# pixel_size_in_microns: 6.5
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# subsampling: [1, 2, 4]
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# sensor_mode: Normal # 12 for progressive, 1 for normal. Normal/Light-Sheet
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# readout_direction: Top-to-Bottom # Top-to-Bottom', 'Bottom-to-Top'
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# lightsheet_rolling_shutter_width: 608
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# defect_correct_mode: 2.0
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# binning: 1x1
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# readout_speed: 2.0
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# trigger_active: 1.0
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# trigger_mode: 1.0 # external light-sheet mode
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# trigger_polarity: 2.0 # positive pulse
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# trigger_source: 2.0 # 2 = external, 3 = software.
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# exposure_time: 20 # Use milliseconds throughout.
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# delay_percent: 20
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# pulse_percent: 1
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# line_interval: 0.000075
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# display_acquisition_subsampling: 4
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# display_acquisition_subsampling: 4
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# average_frame_rate: 4.969
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# frames_to_average: 1
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# exposure_time_range:
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# min: 1
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# max: 1000
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# step: 1
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remote_focus_device:
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hardware:
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type: NI #synthetic #EquipmentSolutions # NI
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channel: PCI6738/ao2 #45/46
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port: COM700
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min: -5
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max: 5
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galvo:
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-
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hardware:
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type: NI
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channel: PCI6738/ao0 #10/11
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min: -5
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max: 5
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waveform: sawtooth
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phase: 1.57079 # pi/2
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filter_wheel:
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hardware:
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type: SutterFilterWheel
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wheel_number: 1
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port: COM1
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baudrate: 9600
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filter_wheel_delay: .030 # in seconds
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available_filters:
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647-LP: 0
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600-50: 1
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525-50: 2
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480-40: 3
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Empty-1: 4
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Empty-2: 5
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Empty-3: 6
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Empty-4: 7
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stage:
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hardware:
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-
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name: stage1
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type: synthetic #MP285
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serial_number: 0001
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port: COM6
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timeout: 0.25
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baudrate: 9600
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axes: [y, x, f]
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axes_mapping: [z, y, x]
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max: 25000
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min: 0
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-
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name: stage2
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type: syntheticstage
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serial_number: 0000
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axes: [theta]
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axes_mapping: [theta]
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max: 360
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min: 0
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-
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name: PIFOC
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type: GalvoNIStage
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serial_number: 0000
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axes: [z]
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axes_mapping: [PCI6738/ao6] #48/49
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volts_per_micron: 0.1*x
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max: 10
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min: 0
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x_max: 12500
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x_min: -12500
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y_max: 12500
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y_min: -12500
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z_max: 200
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z_min: 0
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f_max: 12500
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f_min: -12500
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theta_max: 360
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theta_min: 0
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x_offset: 0
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y_offset: 0
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z_offset: 0
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theta_offset: 0
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f_offset: 0
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zoom:
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hardware:
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type: synthetic
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servo_id: 1
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port: COM18
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baudrate: 10000
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position:
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62.5X: 0.104
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pixel_size:
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62.5X: 0.104
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stage_positions:
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BABB:
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f:
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62.5X: 0
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shutter:
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hardware:
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type: SyntheticShutter
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channel: PCI6738/port0/line10
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min: 0
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max: 5
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lasers:
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- wavelength: 405
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onoff:
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hardware:
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type: NI
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channel: PCI6738/port1/line5 # 7/41
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min: 0
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max: 5
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power:
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hardware:
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type: NI
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channel: PCI6738/ao8 # 16/50
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min: 0
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max: 5
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type: Obis
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- wavelength: 445
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onoff:
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hardware:
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type: NI
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channel: PCI6738/port1/line2 # 5/39
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min: 0
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max: 5
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power:
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hardware:
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type: NI
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channel: PCI6738/ao9 # 17/50
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min: 0
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max: 5
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type: Obis
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- wavelength: 488
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onoff:
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hardware:
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type: NI
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channel: PCI6738/port1/line3 # 6/39
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min: 0
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max: 5
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power:
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hardware:
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type: NI
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channel: PCI6738/ao10 # 51/50
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min: 0
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max: 5
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type: Obis
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- wavelength: 514
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onoff:
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hardware:
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type: NI
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channel: PCI6738/port1/line4 #40/41
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min: 0
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max: 5
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power:
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hardware:
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type: NI
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channel: PCI6738/ao11 #52/18
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min: 0
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max: 5
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type: Obis
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- wavelength: 561
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onoff:
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hardware:
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type: NI
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channel: PCI6738/port1/line6 # 8/42
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min: 0
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max: 5
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power:
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hardware:
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type: NI
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channel: PCI6738/ao12 #53/20
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min: 0
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max: 5
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type: Obis
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- wavelength: 640
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onoff:
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hardware:
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type: NI
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channel: PCI6738/port0/line0 #9/42
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min: 0
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max: 5
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power:
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hardware:
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type: NI
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channel: PCI6738/ao13 #54/20
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min: 0
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max: 5
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type: Obis
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gui:
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channels:
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count: 5
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