# Only one microscope can be active in the GUI at a time, but all microscopes will be accessible
microscopes:
  CTASLMv2:
    daq:
      hardware:
        type: NI
      sample_rate: 100000

      # triggers
      master_trigger_out_line: PCI6738/port0/line1 #3
      camera_trigger_out_line: /PCI6738/ctr0 #9/42
      trigger_source: /PCI6738/PFI0 #4

    camera:
#      -
      hardware:
        type: HamamatsuOrca
        serial_number: 100803
      defect_correct_mode: 2.0
      delay: 20 #ms
      settle_down: 0.0 #ms
#      -
#        hardware:
#          name: camera
#          type: HamamatsuOrca
#          serial_number: 003054
#        x_pixels: 2048.0
#        y_pixels: 2048.0
#        pixel_size_in_microns: 6.5
#        subsampling: [1, 2, 4]
#        sensor_mode: Normal  # 12 for progressive, 1 for normal. Normal/Light-Sheet
#        readout_direction: Top-to-Bottom  # Top-to-Bottom', 'Bottom-to-Top'
#        lightsheet_rolling_shutter_width: 608
#        defect_correct_mode: 2.0
#        binning: 1x1
#        readout_speed: 2.0
#        trigger_active: 1.0
#        trigger_mode: 1.0 # external light-sheet mode
#        trigger_polarity: 2.0  # positive pulse
#        trigger_source: 2.0  # 2 = external, 3 = software.
#        exposure_time: 20 # Use milliseconds throughout.
#        delay_percent: 20
#        pulse_percent: 1
#        line_interval: 0.000075
#        display_acquisition_subsampling: 4
#        display_acquisition_subsampling: 4
#        average_frame_rate: 4.969
#        frames_to_average: 1
#        exposure_time_range:
#          min: 1
#          max: 1000
#          step: 1

    remote_focus_device:
      hardware:
        type: NI #synthetic #EquipmentSolutions # NI
        channel: PCI6738/ao2  #45/46
        port: COM700
        min: -5
        max: 5
    galvo:
      -
        hardware:
          type: NI
          channel: PCI6738/ao0  #10/11
          min: -5
          max: 5
        waveform: sawtooth
        phase: 1.57079 # pi/2
    filter_wheel:
      hardware:
        type: SutterFilterWheel
        wheel_number: 1
        port: COM1
        baudrate: 9600
      filter_wheel_delay: .030 # in seconds
      available_filters:
        647-LP: 0
        600-50: 1
        525-50: 2
        480-40: 3
        Empty-1: 4
        Empty-2: 5
        Empty-3: 6
        Empty-4: 7
    stage:
      hardware:
        -
          name: stage1
          type: synthetic #MP285
          serial_number: 0001
          port: COM6
          timeout: 0.25
          baudrate: 9600
          axes: [y, x, f]
          axes_mapping: [z, y, x]
          max: 25000
          min: 0
        -
          name: stage2
          type: syntheticstage
          serial_number: 0000
          axes: [theta]
          axes_mapping: [theta]
          max: 360
          min: 0
        -
          name: PIFOC
          type: GalvoNIStage
          serial_number: 0000
          axes: [z]
          axes_mapping: [PCI6738/ao6] #48/49
          volts_per_micron: 0.1*x
          max: 10
          min: 0
      x_max: 12500
      x_min: -12500
      y_max: 12500
      y_min: -12500
      z_max: 200
      z_min: 0
      f_max: 12500
      f_min: -12500
      theta_max: 360
      theta_min: 0

      x_offset: 0
      y_offset: 0
      z_offset: 0
      theta_offset: 0
      f_offset: 0
    zoom:
      hardware:
        type: synthetic
        servo_id: 1
        port: COM18
        baudrate: 10000
      position:
        62.5X: 0.104
      pixel_size:
        62.5X: 0.104
      stage_positions:
        BABB:
          f:
            62.5X: 0
    shutter:
      hardware:
        type: SyntheticShutter
        channel: PCI6738/port0/line10
        min: 0
        max: 5
    lasers:
      - wavelength: 405
        onoff:
          hardware:
            type: NI
            channel: PCI6738/port1/line5 # 7/41
            min: 0
            max: 5
        power:
          hardware:
            type: NI
            channel: PCI6738/ao8 # 16/50
            min: 0
            max: 5
        type: Obis

      - wavelength: 445
        onoff:
          hardware:
            type: NI
            channel: PCI6738/port1/line2 # 5/39
            min: 0
            max: 5
        power:
          hardware:
            type: NI
            channel: PCI6738/ao9 # 17/50
            min: 0
            max: 5
        type: Obis
      - wavelength: 488
        onoff:
          hardware:
            type: NI
            channel: PCI6738/port1/line3 # 6/39
            min: 0
            max: 5
        power:
          hardware:
            type: NI
            channel: PCI6738/ao10 # 51/50
            min: 0
            max: 5
        type: Obis

      - wavelength: 514
        onoff:
          hardware:
            type: NI
            channel: PCI6738/port1/line4 #40/41
            min: 0
            max: 5
        power:
          hardware:
            type: NI
            channel: PCI6738/ao11  #52/18
            min: 0
            max: 5
        type: Obis
      - wavelength: 561
        onoff:
          hardware:
            type: NI
            channel: PCI6738/port1/line6 # 8/42
            min: 0
            max: 5
        power:
          hardware:
            type: NI
            channel: PCI6738/ao12 #53/20
            min: 0
            max: 5
        type: Obis

      - wavelength: 640
        onoff:
          hardware:
            type: NI
            channel: PCI6738/port0/line0 #9/42
            min: 0
            max: 5
        power:
          hardware:
            type: NI
            channel: PCI6738/ao13 #54/20
            min: 0
            max: 5
        type: Obis

gui:
  channels:
    count: 5