Commit Graph

103 Commits

  • skills: make backend plugin skills invocable without an executor (#27387)
    ## Why
    
    #27198 made the extension-owned `codex_apps` MCP connection the hosted
    plugin runtime, but its `mcp/skill` resources still bypassed the skills
    extension. App-server could list and read those resources through
    generic MCP APIs, but a thread with no selected environment did not
    expose them in the model's skills catalog or load their `SKILL.md`
    through `$skill`.
    
    Hosted skills should stay remote while using the same typed catalog,
    source authority, deduplication, bounded contextual catalog, and
    selected-skill prompt injection as host and executor skills. They should
    not be downloaded or exposed as ambient filesystem paths.
    
    ## What changed
    
    - Add a session-scoped `McpResourceClient` over the replaceable MCP
    connection manager so resource list/read calls follow startup and
    refresh replacements.
    - Add a `BackendSkillProvider` that pages `codex_apps` resources,
    accepts bounded and validated `mcp/skill` entries, and reads a selected
    skill's `SKILL.md` through the same MCP connection.
    - Register the remote provider in app-server and include it in the
    skills catalog even when a thread has no selected capability roots or
    executor.
    - Contribute hosted skill metadata through the bounded
    `AvailableSkillsInstructions` developer-context path, exclude remote
    entries from per-turn catalog injection, and classify `<skills>`
    messages as contextual developer content so rollback can trim and
    rebuild them correctly.
    
    ## Testing
    
    - Extend the app-server MCP resource integration test with
    `environments: []` to exercise two-page discovery, filter a
    non-`mcp/skill` resource, verify the escaped developer catalog entry and
    user-role `<skill>` fragment containing the fetched `SKILL.md`, and
    preserve generic MCP resource reads.
    - Add core event-mapping coverage that classifies `<skills>` developer
    messages as contextual history.
  • [codex] Store compact window id in rollout (#27264)
    ## Why
    
    Compaction window identity is part of session history, not model-client
    transport state. Persisting it with the compacted rollout item lets
    resumed threads continue from the reconstructed window without keeping
    mutable window state on `ModelClient`.
    
    ## What changed
    
    - Added `window_id` to `CompactedItem` and stamp it when
    `replace_compacted_history` installs compacted history.
    - Moved auto-compact window id ownership into `AutoCompactWindow` /
    `SessionState`; `ModelClient` now receives the request window id from
    callers instead of storing it.
    - Returned `window_id` from rollout reconstruction for resume.
    Reconstruction uses the newest surviving compacted item's stored
    `window_id` when present, and falls back to the legacy compacted-item
    count when it is absent.
    - Kept fork startup at the fresh default window id and updated direct
    model-client tests to pass explicit test window ids.
    
    ## Validation
    
    - `cargo check -p codex-core --tests`
  • Use latest-wins MCP manager replacement (#27259)
    ## Summary
    
    We originally addressed startup prewarming holding the read side of
    `RwLock<McpConnectionManager>` by snapshotting tool-list state. Review
    feedback identified the broader ownership problem: the outer
    synchronization should only publish or retrieve the current manager,
    while MCP operations rely on the manager's internal synchronization. A
    follow-up preserved operation retirement with a separate gate, but
    further review questioned whether that synchronization was actually
    required and whether we could support latest-wins replacement instead.
    
    This PR now stores the current MCP manager in `ArcSwap`. Each operation
    uses `load_full()` to obtain an owned `Arc<McpConnectionManager>`, then
    performs MCP I/O without retaining the publication mechanism. Refresh
    cancels obsolete startup work, constructs a replacement, and atomically
    publishes it. New operations see the latest manager, while operations
    that already loaded the previous manager retain a valid handle. Refresh
    happens at a turn boundary, so there should be no active user tool calls
    to drain.
    
    Git history supports dropping the outer `RwLock`. It was introduced in
    `03ffe4d595` on November 17, 2025 for non-blocking MCP startup: the
    session published an empty manager, startup initialized that same object
    while holding the write lock, and readers waited for initialization.
    `7cd2e84026` on February 19, 2026 removed that two-phase initialization
    in favor of constructing a fresh manager and swapping it in, explicitly
    noting that `Option` or `OnceCell` could replace the placeholder design.
    Hot reload later reused the existing lock to publish a replacement, but
    I found no indication that the lock was introduced to guarantee
    in-flight tool calls finish before refresh or shutdown.
    
    Terminal shutdown remains separate from refresh: it aborts startup
    prewarming and active tasks before shutting down the current manager, so
    tool calls may be interrupted and no model WebSocket work continues
    after shutdown. Focused regression coverage exercises pending tool-list
    cancellation, deferred refresh, and startup-prewarm shutdown.
  • [codex] Make MCP connection startup fallible (#27261)
    ## Why
    
    Required MCP server startup was enforced in `Session::new` after
    `McpConnectionManager` had already created the clients. That split let
    other manager construction paths bypass the same requirement and exposed
    manager internals solely so the session could validate them. Keeping
    required-server readiness in the constructor gives every caller one
    consistent startup contract.
    
    ## What changed
    
    - make `McpConnectionManager::new` return `anyhow::Result<Self>` and
    fail when an enabled, required server cannot initialize
    - pass the startup cancellation token into the constructor so
    required-server waits remain cancellable
    - propagate constructor failures through resource reads, connector
    discovery, and MCP status collection
    - preserve the active manager and cancellation token when a refreshed
    replacement fails
    - keep required-startup failure collection private and cover the
    constructor error contract directly
    
    ## Validation
    
    - updated the focused connection-manager test to assert the complete
    required-server startup error
    - local tests not run; relying on CI
  • [codex-analytics] add extensible feature thread sources (#27063)
    ## Why
    - `ThreadSource` currently defines a closed set of core-owned values
    - Product features also create threads for background or scheduled work
    - Adding every product-specific value to the core enum would require
    repeated `codex-rs` protocol changes
    - Feature-backed values let product callers provide precise attribution
    while preserving the existing core classifications
    
    ## What Changed
    - Adds `ThreadSource::Feature(String)` for app-owned thread source
    values
    - Represents all app-server v2 thread sources as scalar strings, so a
    feature source is supplied as `"automation"`
    - Persists and emits the feature's plain string label, so `"automation"`
    produces `thread_source="automation"` in analytics
    - Keeps `user`, `subagent`, and `memory_consolidation` as explicit
    core-owned values and regenerates the app-server schemas and TypeScript
    bindings
    
    ## Verification
    - `just write-app-server-schema`
    - `cargo check --workspace`
    - `just test -p codex-protocol
    feature_thread_source_serializes_as_its_app_owned_label`
    - `just test -p codex-app-server-protocol
    thread_sources_round_trip_as_scalar_labels`
    - `cargo test -p codex-analytics
    thread_initialized_event_serializes_expected_shape`
    - `just fmt`
  • Load selected executor skills through extensions (#27184)
    ## Why
    
    CCA is moving toward a split runtime where the orchestrator may not have
    a filesystem, while executors can expose preinstalled plugins and
    skills. A thread therefore needs to select capabilities without asking
    app-server or core to interpret executor-owned paths through the
    orchestrator's filesystem.
    
    The longer-term model is broader than executor skills:
    
    - A plugin is a bundle of skills, MCP servers, connectors/apps, and
    hooks.
    - A plugin root can be local, executor-owned, or hosted by a backend.
    - Components inside one plugin can use different access and execution
    mechanisms. A skill may be read from a filesystem or through backend
    tools; an HTTP MCP server can run without an executor; a stdio MCP
    server or hook needs an execution environment.
    - Core should carry generic extension initialization data. The extension
    that owns a component should discover it, expose it to the model, and
    invoke it through the appropriate runtime.
    
    This PR establishes that architecture through one complete vertical:
    selecting a root on an executor, discovering the skills beneath it,
    exposing those skills to the model, and reading an explicitly invoked
    `SKILL.md` through the same executor.
    
    ## Contract
    
    `thread/start` gains an experimental `selectedCapabilityRoots` field:
    
    ```json
    {
      "selectedCapabilityRoots": [
        {
          "id": "deploy-plugin@1",
          "location": {
            "type": "environment",
            "environmentId": "workspace",
            "path": "/opt/codex/plugins/deploy"
          }
        }
      ]
    }
    ```
    
    The root is intentionally not classified as a "plugin" or "skill" in the
    API. It can point at a standalone skill, a directory containing several
    skills, or a plugin containing skills and other components. This PR only
    teaches the skills extension how to consume it; later extensions can
    resolve MCP, connector, and hook components from the same selection.
    
    The platform-supplied `id` is stable selection identity. The location
    says which runtime owns the root and gives that runtime an opaque path.
    App-server does not inspect or canonicalize the path.
    
    ## What changed
    
    ### Generic thread extension initialization
    
    App-server converts selected roots into `ExtensionDataInit`. Core
    carries that generic initialization value until the final thread ID is
    known, then creates thread-scoped `ExtensionData` before lifecycle
    contributors run.
    
    This keeps `Session` and core independent of the capability-selection
    contract. The initialization value is consumed during construction; it
    is not retained as another long-lived `Session` field.
    
    ### Executor-backed skills
    
    The skills extension now owns an `ExecutorSkillProvider` that:
    
    - resolves the selected environment through `EnvironmentManager`
    - discovers, canonicalizes, and reads skills through that environment's
    `ExecutorFileSystem`
    - contributes the bounded selected-skill catalog as stable developer
    context
    - reads an explicitly invoked skill body through the authority that
    listed it
    - warns when an environment or root is unavailable
    - never falls back to the orchestrator filesystem for an executor-owned
    root
    
    Skill catalog and instruction fragments have hard byte bounds, which
    also bound them below the 10K-token per-item context limit. If a
    selected executor skill has the same name as a legacy local skill, the
    executor selection owns that invocation and the local body is not
    injected a second time.
    
    Existing local and bundled skill loading remains in place. Omitting
    `selectedCapabilityRoots` therefore preserves current local-only
    behavior.
    
    ## Current semantics
    
    - Only environment-owned locations are represented in this first
    contract.
    - Roots are resolved by the destination extension, not by app-server or
    core.
    - An unavailable executor or invalid root produces a warning and no
    capabilities from that root; it does not trigger a local-filesystem
    fallback.
    - Selection applies to a newly started active thread.
    - MCP servers, connectors, and hooks beneath a selected plugin root are
    not activated yet.
    - Selection is not yet persisted or inherited across resume, fork, or
    subagent creation. Existing local capabilities continue to behave as
    they do today in those flows.
    
    ## Planned vertical follow-ups
    
    1. **Hosted HTTP MCP:** add an extension-backed HTTP MCP source that
    works without an executor, then replace the special-purpose MCP plugins
    loader with that implementation.
    2. **Executor MCP:** register and execute stdio MCP servers through the
    environment that owns the selected plugin root.
    3. **Backend skills:** add a hosted skill source whose catalog and
    bodies are accessed through extension tools rather than a filesystem.
    4. **Connectors and hooks:** activate those components through their
    owning extensions, using the same selected-root boundary and
    component-specific runtime.
    5. **Durable selection:** define the desired-selection lifecycle,
    persist it, and make resume, fork, and subagent inheritance explicit
    rather than accidental.
    6. **Local convergence:** incrementally route existing local plugin,
    skill, and MCP loading through the same extension model while preserving
    current local behavior.
    
    Each follow-up remains reviewable as an end-to-end capability. The
    platform selects roots, generic thread extension data carries the
    selection, and the owning extension resolves and operates its component.
    
    ## Verification
    
    Coverage added for:
    
    - app-server end-to-end discovery and explicit invocation of a skill
    inside an executor-selected plugin root
    - exclusive invocation when a selected executor skill collides with a
    local skill name
    - executor filesystem authority for discovery, canonicalization, and
    reads
    - thread extension initialization before lifecycle contributors run
    - stable executor catalog context, explicit invocation, context
    rebuilding, hidden skills, and preserved host/remote catalog behavior
    
    Targeted protocol, core-skills, skills-extension, core lifecycle, and
    app-server executor-skill tests were run during development.
  • Pair thread environment settings (#26687)
    ## Why
    
    Thread cwd and environment selections are a single logical setting in
    core: updating one without the other can silently desynchronize the
    next-turn execution context. This change makes that relationship
    explicit in the internal thread settings flow while preserving the
    existing app-server public API shape.
    
    ## What changed
    
    - Moved the cwd/environment pair through internal
    `ThreadSettingsOverrides.environment_settings` instead of a top-level
    internal `cwd` field.
    - Kept `thread/settings/update` public params unchanged, with app-server
    translating top-level `cwd` into the paired internal settings shape.
    - Moved `Op::UserInput` environment overrides into thread settings so
    user turns and settings updates use the same core path.
    - Updated core, app-server, MCP, memories, sample, and test callsites to
    construct the paired settings shape.
    
    ## Verification
    
    - `git diff --check`
    - Local test run starting after PR creation.
  • feat: count V2 concurrency by active execution (#26969)
    ## Why
    
    Multi-Agent V2 concurrency should count active non-root turns, not
    resident or durable agent threads. The limit is intentionally best
    effort: admission checks are synchronous, but concurrent successful
    checks may overshoot slightly.
    
    ## What changed
    
    - Keep one root-derived execution limit on the shared `AgentControl`.
    - Count active V2 subagent turns with an RAII guard owned by
    `RunningTask`.
    - Check capacity before spawning or starting an idle agent, including
    direct app-server `turn/start` submissions.
    - Preserve queued delivery for agents that are already running.
    - Exempt automatic idle continuations so `/goal` work is not dropped
    when capacity is temporarily full.
    - Keep root and V1 turns outside this limiter.
    
    ## Test coverage
    
    - `execution_guards_count_active_v2_subagent_turns`
    - `execution_guards_ignore_root_and_v1_turns`
    - `v2_nested_spawn_checks_shared_active_execution_capacity`
  • [2 of 2] Finish moving goal runtime to extension (#26548)
    ## Stack
    
    1. [#26547](https://github.com/openai/codex/pull/26547) - [1 of 2] Align
    goal extension with core behavior
    2. [#26548](https://github.com/openai/codex/pull/26548) - [2 of 2] Move
    goal runtime to extension
    
    ## Why
    
    This PR completes the switch of the goal behavior to the
    extension-backed runtime and removes the old core goal implementation.
    
    ## What Changed
    
    - Installs the goal extension for app-server `ThreadManager` sessions.
    - Routes app-server thread goal `get`, `set`, and `clear` through
    `GoalService`.
    - Uses thread-idle lifecycle emission after goal resume and snapshot
    ordering so the extension can decide whether to continue the goal.
    - Forwards extension goal updates through a FIFO async app-server
    notification path so backpressure does not drop them or reorder updates.
    - Keeps review turns from enabling goal runtime behavior.
    - Plans extension tools before dynamic tools so built-in goal tool names
    keep their old precedence when goals are enabled.
    - Removes the old core goal runtime, core goal tool handlers, and core
    goal tool specs.
    - Updates tests that were coupled to the core-owned goal runtime while
    leaving the legacy `<goal_context>` compatibility path in core for old
    threads.
    - Removes the stale cargo-shear ignore now that `codex-goal-extension`
    is used by the workspace.
    - Keeps realtime event matching exhaustive after removing the old
    goal-specific realtime text path.
    
    
    ## Validation
    
    - Ran manual `/goal` runs in TUI. Validated time accounting matched
    wall-clock time and goal lifecycle state transitions.
  • Require absolute cwd in thread settings (#26532)
    ## Why
    
    Thread settings cwd overrides are expected to be resolved before they
    enter core. Keeping this boundary as a plain `PathBuf` made it easy for
    core/session code to keep fallback normalization and relative-path
    resolution logic in places that should only receive an already-resolved
    cwd.
    
    This is intentionally the absolute-cwd-only slice: it does not change
    environment selection stickiness or cwd-to-default-environment fallback
    behavior.
    
    ## What changed
    
    - Changes `ThreadSettingsOverrides.cwd`,
    `CodexThreadSettingsOverrides.cwd`, and `SessionSettingsUpdate.cwd` to
    use `AbsolutePathBuf`.
    - Removes core-side cwd normalization/resolution from session settings
    updates.
    - Updates affected core/app-server test helpers and callsites to pass
    existing absolute cwd values or use `abs()` helpers.
    
    ## Validation
    
    Opening as draft so CI can start while local validation continues.
  • Route AGENTS.md loading through environment filesystems (#26205)
    ## Why
    
    Workspace-specific `AGENTS.md` loading needs to use the selected
    environment filesystem so remote workspaces and child agents read
    instructions from their actual environment instead of the host
    filesystem. The app-server should report the same instruction sources
    the initialized thread actually loaded, rather than independently
    rescanning configuration and filesystem state.
    
    ## What changed
    
    - Introduce `LoadedAgentsMd` to retain ordered user, project, and
    internal instructions with their provenance.
    - Load and canonicalize workspace `AGENTS.md` paths through the primary
    `EnvironmentManager` environment, then render the loaded instructions
    when constructing turn context.
    - Expose cached loaded instruction sources from initialized threads and
    use them for app-server start, resume, and fork responses.
    - Preserve global `CODEX_HOME` loading and separator behavior while
    excluding empty project files that did not supply model-visible
    instructions.
    - Add integration coverage for CLI injection, selected-environment
    provenance and rendering, empty environment selection, and cached
    sources on loaded-thread resume.
    
    ## Validation
    
    - `just test -p codex-core agents_md`
    - `just test -p codex-core
    selected_environment_sources_match_model_visible_instructions`
    - `just test -p codex-exec agents_md`
    - `just test -p codex-app-server instruction_sources`
    - `just test -p codex-app-server --status-level fail`
  • [codex-analytics] emit forked thread id on initialization (#26248)
    ## Why
    - Thread initialization analytics do not identify the source thread for
    forked threads.
    - The session viewer needs this lineage to construct thread trees.
    - Depends on openai/openai#987854. Do not release this change before
    that backend schema change is deployed.
    
    ## What Changed
    - Adds optional `forked_from_thread_id` to `codex_thread_initialized`.
    - Populates it from the existing thread fork lineage for app-server and
    in-process subagent initialization paths.
    - Keeps it null for non-forked threads.
    
    ## Verification
    - `just fmt`
    - `just test -p codex-analytics`
    - `just test -p codex-app-server
    thread_fork_tracks_thread_initialized_analytics`
  • core: stop threading SandboxPolicy through exec (#25700)
    ## Why
    
    #25450 attempts a broad `SandboxPolicy` removal across several unrelated
    surfaces, which makes it hard to review and still leaves new helper code
    moving legacy policies around. This PR is a narrower alternative:
    migrate only the exec-side Windows sandbox plumbing so the review can
    focus on one production path and one compatibility boundary.
    
    The goal is to stop threading `SandboxPolicy` through exec code without
    expanding the migration into app-server, protocol, telemetry, config, or
    session behavior.
    
    ## What changed
    
    - Removed `ExecRequest::compatibility_sandbox_policy()`.
    - Changed the Windows restricted-token and elevated filesystem override
    helpers to accept `PermissionProfile` plus the split filesystem/network
    policies instead of a `SandboxPolicy`.
    - Kept the remaining legacy projection local to the writable-root
    comparison that still needs to compare split policy behavior against the
    legacy Windows backend model.
    - Rejected restricted split filesystem policies that still grant
    full-disk writes before using the Windows restricted-token backend,
    preserving the previous clear-failure behavior for profiles that project
    to `ExternalSandbox`.
    - Updated the Windows sandbox override tests to exercise the new call
    shape and cover the full-write split-profile regression.
    
    ## Verification
    
    - `just test -p codex-core windows_restricted_token`
    - `just test -p codex-core windows_elevated`
  • chore: mechanical rename (#26156)
    Rename `Session::conversation_id` to `Session::thread_id` with an auto
    refactor in RustRover
  • Resolve per-thread multi-agent runtime (#25722)
    Stack split from #25708. Original PR intentionally left open. This third
    PR resolves the effective per-thread multi-agent runtime from persisted
    metadata, inherited runtime, and current model selection.
  • Persist multi-agent runtime metadata (#25721)
    Stack split from #25708. Original PR intentionally left open. This
    second PR persists multi-agent runtime metadata through thread creation,
    rollout recording, and thread storage.
  • app-server: remove experimental persist_extended_history bool flag (#25712)
    ## Summary
    
    Remove the dead experimental `persistExtendedHistory` app-server flag
    and collapse rollout persistence to the single policy app-server already
    used.
    
    ## What Changed
    
    - Removed `persistExtendedHistory` from v2 thread start/resume/fork
    params and deleted its deprecation notice path.
    - Removed the persistence-mode enums and plumbing through core, rollout,
    and thread-store.
    - Made rollout filtering mode-free, keeping the existing limited
    persisted-history behavior.
    
    ## Test Plan
    
    - `just write-app-server-schema`
    - `cargo nextest run --no-fail-fast -p codex-app-server-protocol
    schema_fixtures`
    - `cargo nextest run --no-fail-fast -p codex-app-server
    thread_shell_command_history_responses_exclude_persisted_command_executions`
    - `cargo nextest run --no-fail-fast -p codex-rollout -p
    codex-thread-store`
    - final `rg` for removed flag/type names
  • store and expose parent_thread_id on Threads (#25113)
    ## Why
    
    This PR
    https://github.com/openai/codex/pull/24161#discussion_r3325692763
    revealed a subagent data modeling issue, where we overloaded
    `forked_from_id` to also mean `parent_thread_id`. That's incorrect since
    guardian and review subagents can be a subagent and NOT fork the main
    thread's history.
    
    The solution here is to explicitly store a new `parent_thread_id` on
    `SessionMeta`, alongside `forked_from_id` which already exists. While
    we're at it, also expose it in the app-server protocol on the `Thread`
    object.
    
    A thread->subagent relationship and a fork of thread history are
    orthogonal concepts.
    
    ## What Changed
    
    - Added top-level `parent_thread_id` persistence on `SessionMeta` and
    runtime/session plumbing through `SessionConfiguredEvent`,
    `CodexSpawnArgs`, `SessionConfiguration`, `ThreadConfigSnapshot`,
    `TurnContext`, and `ModelClient`.
    - Made turn metadata, request headers, analytics, and subagent-start
    events read the separate runtime/top-level parent field instead of
    deriving general parent lineage from `SessionSource` or
    `forked_from_thread_id`.
    - Passed parent lineage separately at delegated subagent, review,
    guardian, agent-job, and multi-agent spawn construction sites;
    copied-history fork lineage remains derived only from `InitialHistory`.
    - Persisted and exposed parent lineage through rollout/thread-store
    projections and app-server v2 `Thread.parentThreadId`.
    - Updated app-server README text and regenerated app-server schema
    fixtures for the additive `parentThreadId` response field.
  • Add thread start contributor facts (#24915)
    Summary: add session source and persistent-state availability to
    ThreadStartInput; populate them from session init; update existing goal
    test harness constructors. Tests: just fmt; git diff --check. No full
    tests or clippy run per request.
  • Thread Guardian cache key through session (#24895)
    Split from the Guardian prompt cache key change. This PR only updates
    codex-rs/core/src/session/session.rs. Validation was not run per
    request; this branch is expected to rely on the companion split PRs.
  • Add forked_from_thread_id turn metadata (#24160)
    ## Why
    
    When Codex calls responsesapi, we currently send `session_id`,
    `thread_id`, and `turn_id` among other things as
    `client_metadata["x-codex-turn-metadata"]`. This PR adds
    `forked_from_thread_id` which helps explain the "lineage" of a forked
    thread.
    
    ## What's changed
    
    - Track the immediate history source copied into a forked thread through
    thread/session creation, including subagent and review turn metadata
    paths.
    - Include `forked_from_thread_id` in Codex turn metadata while
    preventing turn-scoped Responses API client metadata from overwriting
    Codex-owned lineage fields.
    - Add coverage for fork lineage in turn metadata and the app-server
    Responses API request path.
  • Move MCP tool naming mode into manager (#21576)
    ## Why
    
    The `non_prefixed_mcp_tool_names` feature should be applied where MCP
    tools become model-visible, not by remapping names later in core.
    Keeping the decision in `McpConnectionManager` construction makes
    `ToolInfo` the single shaped view that spec building, deferred tool
    search, routing, and unavailable-tool placeholders can consume directly.
    
    This also preserves the existing external behavior while the feature is
    off, and keeps the feature-on behavior for code mode and hooks explicit
    at the manager boundary.
    
    ## What Changed
    
    - Add `McpToolNameMode` to `codex-mcp` and flow it through `McpConfig`
    into `McpConnectionManager::new`.
    - Normalize MCP `ToolInfo` names in the manager using either
    legacy-prefixed namespaces or non-prefixed namespaces; the legacy path
    adds `mcp__` without restoring the old trailing namespace suffix.
    - Remove the core-side MCP name remapping path so specs, tool search,
    session resolution, and unavailable-tool placeholder construction use
    the manager-provided `ToolName` values directly.
    - Keep code mode flattening on the `__` namespace separator.
    - Preserve hook compatibility by giving non-prefixed MCP hook names
    legacy `mcp__...` matcher aliases.
    - Add/adjust integration and unit coverage for non-prefixed code-mode
    behavior, hook matching with the feature on and off, and manager-level
    legacy prefixing.
    
    ## Testing
    
    - `cargo test -p codex-mcp --lib`
    - `cargo test -p codex-core --lib tools::spec::tests -- --nocapture`
    - `cargo test -p codex-core --lib mcp_tools -- --nocapture`
    - `cargo test -p codex-core --lib mcp_tool_exposure -- --nocapture`
    - `cargo test -p codex-core --test all mcp_tool -- --nocapture`
    - `cargo test -p codex-core --test all search_tool -- --nocapture`
    - `cargo test -p codex-core --test all hooks_mcp -- --nocapture`
    - `cargo test -p codex-core --test all
    code_mode_uses_non_prefixed_mcp_tool_names_when_feature_enabled --
    --nocapture`
    - `cargo test -p codex-tools`
    - `cargo test -p codex-features`
  • package: include zsh fork in Codex package (#23756)
    ## Why
    
    The package layout gives Codex a stable place for runtime helpers that
    should travel with the entrypoint. `shell_zsh_fork` still required users
    to configure `zsh_path` manually, even though we already publish
    prebuilt zsh fork artifacts.
    
    This PR builds on #24129 and uses the shared DotSlash artifact fetcher
    to include the zsh fork in Codex packages when a matching target
    artifact exists. Packaged Codex builds can then discover the bundled
    fork automatically; the user/profile `zsh_path` override is removed so
    the feature uses the package-managed artifact instead of a legacy path
    knob.
    
    ## What Changed
    
    - Added `scripts/codex_package/codex-zsh`, a checked-in DotSlash
    manifest for the current macOS arm64 and Linux zsh fork artifacts.
    - Taught `scripts/build_codex_package.py` to fetch the matching zsh fork
    artifact and install it at `codex-resources/zsh/bin/zsh` when available
    for the selected target.
    - Added package layout validation for the optional bundled zsh resource.
    - Added `InstallContext::bundled_zsh_path()` and
    `InstallContext::bundled_zsh_bin_dir()` for package-layout resource
    discovery.
    - Threaded the packaged zsh path through config loading as the runtime
    `zsh_path` for packaged installs, and removed the config/profile/CLI
    override path.
    - Kept the packaged default zsh override typed as `AbsolutePathBuf`
    until the existing runtime `Config::zsh_path` boundary.
    - Updated app-server zsh-fork integration tests to spawn
    `codex-app-server` from a temporary package layout with
    `codex-resources/zsh/bin/zsh`, matching the new packaged discovery path
    instead of setting `zsh_path` in config.
    - Switched package executable copying from metadata-preserving `copy2()`
    to `copyfile()` plus explicit executable bits, which avoids macOS
    file-flag failures when local smoke tests use system binaries as inputs.
    
    ## Testing
    
    To verify that the `zsh` executable from the Codex package is picked up
    correctly, first I ran:
    
    ```shell
    ./scripts/build_codex_package.py
    ```
    
    which created:
    
    ```
    /private/var/folders/vw/x2knqmks50sfhfpy27nftl900000gp/T/codex-package-pms94kdp/
    ```
    
    so then I ran:
    
    ```
    /private/var/folders/vw/x2knqmks50sfhfpy27nftl900000gp/T/codex-package-pms94kdp/bin/codex exec --enable shell_zsh_fork 'run `echo $0`'
    ```
    
    which reported the following, as expected:
    
    ```
    /private/var/folders/vw/x2knqmks50sfhfpy27nftl900000gp/T/codex-package-pms94kdp/codex-resources/zsh/bin/zsh
    ```
    
    
    
    ---
    [//]: # (BEGIN SAPLING FOOTER)
    Stack created with [Sapling](https://sapling-scm.com). Best reviewed
    with [ReviewStack](https://reviewstack.dev/openai/codex/pull/23756).
    * #23768
    * __->__ #23756
  • otel: drop legacy profile usage telemetry (#24061)
    ## Summary
    - drop the dead legacy profile usage metric and active-profile
    conversation-start fields
    - update role comments so they describe provider and service-tier
    preservation without legacy config-profile wording
    - pair the code cleanup with the file-backed profile docs update in
    openai/developers-website#1476
    
    ## Testing
    - `just fmt`
    - `cargo test -p codex-otel`
    - `cargo test -p codex-core` *(fails: existing stack overflow in
    `mcp_tool_call::tests::guardian_mode_mcp_denial_returns_rationale_message`)*
    - `cargo test -p codex-core --lib
    mcp_tool_call::tests::guardian_mode_mcp_denial_returns_rationale_message`
    *(fails with the same stack overflow)*
  • config: remove legacy profile write paths (#24055)
    ## Why
    
    [#23883](https://github.com/openai/codex/pull/23883) moved the
    user-facing `--profile` flag onto profile v2 and
    [#23886](https://github.com/openai/codex/pull/23886) removed CLI
    forwarding for the legacy profile-v1 path. Core and TUI config
    persistence still carried `active_profile` and
    `ConfigEditsBuilder::with_profile`, which let later writes continue
    targeting legacy `[profiles.<name>]` tables after profile selection
    moved to profile-v2 config files.
    
    ## What
    
    - Remove legacy profile routing from
    [`ConfigEditsBuilder`](https://github.com/openai/codex/blob/4b38e9c22e762261d7f7eef49d8a21792e241a06/codex-rs/core/src/config/edit.rs#L1064-L1294),
    so core config edits no longer carry `with_profile` or infer
    `[profiles.*]` write targets from a `profile` key.
    - Drop `active_profile` plumbing from runtime `Config`, TUI
    startup/state, app-server config override forwarding, and Windows
    sandbox setup persistence.
    - Make app-server-backed TUI config edits use unscoped model,
    service-tier, feature, Auto-review, plan-mode, and Windows sandbox paths
    through
    [`tui/src/config_update.rs`](https://github.com/openai/codex/blob/4b38e9c22e762261d7f7eef49d8a21792e241a06/codex-rs/tui/src/config_update.rs#L43-L112).
    - Update config edit coverage so legacy `profile` state stays untouched
    by direct model writes, and remove tests whose only contract was the
    deleted profile-scoped persistence path.
    
    ## Testing
    
    - Not run locally.
  • Route MCP servers through explicit environments (#23583)
    ## Summary
    - route each configured MCP server through an explicit per-server
    `environment_id` instead of a manager-wide remote toggle
    - default omitted `environment_id` to `local`, resolve named ids through
    `EnvironmentManager`, and fail only the affected MCP server when an
    explicit id is unknown
    - keep local stdio on the existing local launcher path for now, while
    named-environment stdio uses the selected environment backend and
    requires an absolute `cwd`
    - allow local HTTP MCP servers to keep using the ambient HTTP client
    when no local `Environment` is configured; named-environment HTTP MCPs
    use that environment's HTTP client
    
    ## Validation
    - devbox Bazel build: `bazel build --bes_backend= --bes_results_url=
    //codex-rs/cli:codex //codex-rs/rmcp-client:test_stdio_server
    //codex-rs/rmcp-client:test_streamable_http_server`
    - devbox app-server config matrix with real `config.toml` /
    `environments.toml` files covering omitted local, explicit local,
    omitted local under remote default, explicit remote stdio, local HTTP
    without local env, explicit remote HTTP, local stdio without local env,
    unknown explicit env, and remote stdio without `cwd`
  • Honor client-resolved service tier defaults (#23537)
    ## Why
    
    Model catalog responses can now advertise a nullable
    `default_service_tier` for each model. Codex needs to preserve three
    distinct states all the way from config/app-server inputs to inference:
    
    - no explicit service tier, so the client may apply the current model
    catalog default when FastMode is enabled
    - explicit `default`, meaning the user intentionally wants standard
    routing
    - explicit catalog tier ids such as `priority`, `flex`, or future tiers
    
    Keeping those states distinct prevents the UI from showing one tier
    while core sends another, especially after model switches or app-server
    `thread/start` / `turn/start` updates.
    
    ## What Changed
    
    - Plumbed `default_service_tier` through model catalog protocol types,
    app-server model responses, generated schemas, model cache fixtures, and
    provider/model-manager conversions.
    - Added the request-only `default` service tier sentinel and normalized
    legacy config spelling so `fast` in `config.toml` still materializes as
    the runtime/request id `priority`.
    - Moved catalog default resolution to the TUI/client side, including
    recomputing the effective service tier when model/FastMode-dependent
    surfaces change.
    - Updated app-server thread lifecycle config construction so
    `serviceTier: null` preserves explicit standard-routing intent by
    mapping to `default` instead of internal `None`.
    - Kept core responsible for validating explicit tiers against the
    current model and stripping `default` before `/v1/responses`, without
    applying catalog defaults itself.
    
    ## Validation
    
    - `CARGO_INCREMENTAL=0 cargo build -p codex-cli`
    - `CARGO_INCREMENTAL=0 cargo test -p codex-app-server model_list`
    - `cargo test -p codex-tui service_tier`
    - `cargo test -p codex-protocol service_tier_for_request`
    - `cargo test -p codex-core get_service_tier`
    - `RUST_MIN_STACK=8388608 CARGO_INCREMENTAL=0 cargo test -p codex-core
    service_tier`
  • core: refresh active permission profiles at runtime (#22931)
    ## Why
    
    Once a named permission profile is selected, runtime state has to keep
    that profile identity intact instead of collapsing back to anonymous
    effective permissions. The session refresh path also needs to rebuild
    profile-derived network proxy state so active profile switches take
    effect consistently.
    
    ## What changed
    
    - Preserve the active permission profile through session updates.
    - Rebuild profile-derived runtime/network configuration when the active
    profile changes.
    - Keep the runtime path aligned with the current session configuration
    APIs.
    - Tighten the affected tests, including the Windows delete-pending
    memory-file case that was intermittently tripping CI.
    
    ## Stack
    
    1. **This PR**: runtime/session/network propagation for active
    permission profiles.
    2. [#23708](https://github.com/openai/codex/pull/23708): TUI selection
    plumbing and guardrail flow.
    3. [#21559](https://github.com/openai/codex/pull/21559): profile-aware
    `/permissions` menu and custom profile display.
    
    <img width="1296" height="906" alt="image"
    src="https://github.com/user-attachments/assets/077fa3a7-80cb-4925-80b1-d2395018d90a"
    />
  • Support compact SessionStart hooks (#21272)
    # Why
    
    Compaction replaces the live conversation history, so hooks that use
    `SessionStart` to re-inject durable model context need a way to run
    again after that rewrite.
    
    Related - #19905 adds dedicated compact lifecycle hooks
    
    # What
    
    - add `compact` as a supported `SessionStart` source and matcher value
    - change pending `SessionStart` state from a single slot to a small FIFO
    queue so `resume` / `startup` / `clear` can be preserved alongside a
    later `compact`
    - drain all queued `SessionStart` sources before the next model request,
    preserving their original order
    
    # Testing
    
    The new integration coverage verifies both the basic `compact` matcher
    path and the stacked `resume` -> `compact` case where both hooks
    contribute `additionalContext` to the next model turn.
  • Move plugin and skill warmup into session startup (#23535)
    ## Why
    
    Plugin and skill loading is useful as warmup and early validation, but
    session startup does not need to wait for that work before it can
    continue building the session. Keeping it on the serial startup path
    adds avoidable latency to every fresh thread start.
    
    We still want invalid skill configurations to show up quickly, and we
    want the warmup to exercise the same plugin and skill manager caches
    that the normal turn path uses.
    
    ## What changed
    
    - moved plugin and skill warmup into the session startup async path
    instead of eagerly awaiting it on the serial setup path
    - kept the warmup using the session's resolved filesystem/environment
    context so skill loading still sees the right roots
    - preserved early skill-load error logging so broken skill
    configurations still surface during startup
    - left the per-turn plugin and skill loading path unchanged, so turns
    still use the normal cached managers
    
    ## Testing
    
    - Not run locally; relying on CI for validation.
  • Make local environment optional in EnvironmentManager (#23369)
    ## Summary
    - make `EnvironmentManager` local environment/runtime paths optional
    - simplify constructor surface around snapshot materialization
    - rename local env accessors to `require_local_environment` /
    `try_local_environment`
    
    ## Validation
    - devbox Bazel build for touched crate surfaces
    - `//codex-rs/exec-server:exec-server-unit-tests`
    - `//codex-rs/app-server-client:app-server-client-unit-tests`
    - filtered touched `//codex-rs/core:core-unit-tests` cases
  • [5 of 7] Replace OverrideTurnContext with ThreadSettings (#22508)
    **Stack position:** [5 of 7]
    
    ## Summary
    
    This PR adds `Op::ThreadSettings`, a queued settings-only update
    mechanism for changing stored thread settings without starting a new
    turn. It also removes the legacy `Op::OverrideTurnContext` in the same
    layer, so reviewers can see the replacement and deletion together.
    
    ## Changes
    
    - Add `Op::ThreadSettings` for settings-only queued updates.
    - Emit `ThreadSettingsApplied` with the effective thread settings
    snapshot after core applies an update.
    - Route settings-only updates through the same submission queue as user
    input.
    - Migrate remaining `OverrideTurnContext` tests and callers to the
    queued `Op::ThreadSettings` path.
    - Delete `Op::OverrideTurnContext` from the core protocol and submission
    loop.
    
    This stack addresses #20656 and #22090.
    
    ## Stack
    
    1. [1 of 7] [Add thread settings to
    UserInput](https://github.com/openai/codex/pull/23080)
    2. [2 of 7] [Remove
    UserInputWithTurnContext](https://github.com/openai/codex/pull/23081)
    3. [3 of 7] [Remove
    UserTurn](https://github.com/openai/codex/pull/23075)
    4. [4 of 7] [Placeholder for OverrideTurnContext
    cleanup](https://github.com/openai/codex/pull/23087)
    5. [5 of 7] [Replace OverrideTurnContext with
    ThreadSettings](https://github.com/openai/codex/pull/22508) (this PR)
    6. [6 of 7] [Add app-server thread settings
    API](https://github.com/openai/codex/pull/22509)
    7. [7 of 7] [Sync TUI thread
    settings](https://github.com/openai/codex/pull/22510)
  • [codex] Move pending input into input queue (#22728)
    ## Why
    
    Pending model input was split across `Session`, `TurnState`, and the
    agent mailbox. That made it easy for new paths to manage queued user
    input or mailbox delivery outside the intended ownership boundary.
    
    This PR consolidates the model-facing input lifecycle behind the session
    input queue so turn-local pending input, next-turn queued items, and
    mailbox delivery coordination are owned in one place.
    
    ## What Changed
    
    - Added `session/input_queue.rs` to own pending input queues and mailbox
    delivery coordination.
    - Removed the standalone `agent/mailbox.rs` channel wrapper and store
    mailbox items directly in the input queue.
    - Moved pending-input mutations off `TurnState`; `TurnState` now exposes
    the queue-owned storage directly for now.
    - Routed abort cleanup, mailbox delivery phase changes, next-turn queued
    items, and active-turn pending input through `InputQueue`.
    - Boxed stack-heavy agent resume/fork startup futures that the refactor
    pushed over the default test stack.
    - Updated session, task, goal, stream-event, and multi-agent call sites
    and tests to use the new queue ownership.
    
    ## Verification
    
    - `cargo test -p codex-core --lib agent::control::tests`
    - `cargo test -p codex-core --lib
    agent::control::tests::resume_closed_child_reopens_open_descendants --
    --exact`
    - `cargo test -p codex-core --lib
    agent::control::tests::spawn_agent_fork_last_n_turns_keeps_only_recent_turns
    -- --exact`
    - `cargo test -p codex-core --lib
    agent::control::tests::resume_thread_subagent_restores_stored_nickname_and_role
    -- --exact`
    - `cargo test -p codex-core` was also run; it completed with 1814
    passed, 4 ignored, and one timeout in
    `agent::control::tests::resume_thread_subagent_restores_stored_nickname_and_role`,
    which passed when rerun in isolation.
  • Make extension lifecycle hooks async (#23291)
    ## Why
    
    Extension lifecycle hooks sit on the host/extension boundary, but the
    current trait surface only allows synchronous callbacks. That forces
    extensions that need to seed, rehydrate, observe, or flush
    extension-owned state during thread and turn transitions to either block
    inside the callback or move async work into separate host plumbing.
    
    This PR makes those lifecycle callbacks awaitable so extension
    implementations can perform async work directly at the lifecycle point
    where the host already has the relevant session, thread, or turn stores
    available.
    
    ## What changed
    
    - Makes `ThreadLifecycleContributor` and `TurnLifecycleContributor`
    async in `codex-extension-api`.
    - Awaits thread start/resume/stop and turn start/stop/abort lifecycle
    callbacks from `codex-core`.
    - Updates the guardian and memories extensions to implement the async
    lifecycle trait surface.
    - Updates the existing lifecycle tests to use async contributor
    implementations.
    - Adds `async-trait` to the crates that now expose or implement these
    async object-safe lifecycle traits.
    
    ## Testing
    
    - Existing `codex-core` lifecycle tests were updated to cover async
    implementations for thread stop and turn abort ordering.
  • core: set permission profiles from snapshots (#22920)
    ## Why
    
    #22891 moved the TUI turn-command path to pass `ActivePermissionProfile`
    instead of the full `PermissionProfile`, but the remaining
    config/session bridge still accepted the concrete `PermissionProfile`
    and active profile id as separate arguments. That shape made it too easy
    for future callers to update the concrete profile and active profile id
    out of sync.
    
    This PR makes the trusted session snapshot path pass one coherent value
    into `Permissions`, while keeping `requirements.toml` enforcement owned
    by the existing constrained permission state.
    
    ## What Changed
    
    - Added `PermissionProfileSnapshot` as the public snapshot value for
    trusted session/config synchronization.
    - Changed `Permissions::set_permission_profile_from_session_snapshot()`
    and `replace_permission_profile_from_session_snapshot()` to take a
    `PermissionProfileSnapshot`.
    - Updated the replacement path to derive its constrained
    `PermissionProfile` from the snapshot, so callers cannot pass a separate
    profile that disagrees with the snapshot.
    - Removed the internal tuple-style
    `PermissionProfileState::set_active_permission_profile()` mutation path.
    - Updated core session projection and TUI call sites to construct
    explicit legacy or active snapshots.
    - Documented the snapshot constructors so legacy use and id/profile
    mismatch hazards are called out at the API boundary.
    - Added a focused config test that verifies snapshot updates still
    respect existing permission constraints.
    
    ## How To Review
    
    1. Start with `codex-rs/core/src/config/resolved_permission_profile.rs`;
    `PermissionProfileSnapshot` is the public wrapper, while
    `ResolvedPermissionProfile` stays internal.
    2. Check `codex-rs/core/src/config/mod.rs` to confirm both
    session-snapshot setters validate through `PermissionProfileState` and
    no longer accept loose profile/id pairs.
    3. Skim `codex-rs/core/src/session/session.rs` for the session
    projection path; it now builds the snapshot before installing it.
    4. Skim the TUI changes as call-site migration from loose argument pairs
    to explicit snapshot construction.
    
    ## Verification
    
    - `cargo test -p codex-core
    permission_snapshot_setter_preserves_permission_constraints`
    - `cargo test -p codex-tui status_permissions_`
    - `cargo test -p codex-tui
    session_configured_preserves_profile_workspace_roots`
    - `just fix -p codex-core -p codex-tui`
  • app-server: use permission ids and runtime workspace roots (#22611)
    ## Why
    
    This PR builds on [#22610](https://github.com/openai/codex/pull/22610)
    and is the app-server side of the migration from mutable per-turn
    `SandboxPolicy` replacement toward selecting immutable permission
    profiles by id plus mutable runtime workspace roots.
    
    Once permission profiles can carry their own immutable
    `workspace_roots`, app-server no longer needs to mutate the selected
    `PermissionProfile` just to represent thread-specific filesystem
    context. The mutable part now lives on the thread as explicit
    `runtimeWorkspaceRoots`, while `:workspace_roots` remains symbolic until
    the sandbox is realized for a turn.
    
    ## What Changed
    
    - Replaced the v2 permission-selection wrapper surface with plain
    profile ids for `thread/start`, `thread/resume`, `thread/fork`, and
    `turn/start`.
    - Removed the API surface for profile modifications
    (`PermissionProfileSelectionParams`,
    `PermissionProfileModificationParams`,
    `ActivePermissionProfileModification`).
    - Added experimental `runtimeWorkspaceRoots` fields to the thread
    lifecycle and turn-start APIs.
    - Threaded runtime workspace roots through core session/thread
    snapshots, turn overrides, app-server request handling, and command
    execution permission resolution.
    - Kept session permission state symbolic so later runtime root updates
    and cwd-only implicit-root retargeting rebind `:workspace_roots`
    correctly.
    - Updated the embedded clients just enough to send and restore the new
    thread state.
    - Refreshed the generated schema/TypeScript artifacts and the app-server
    README to match the new contract.
    
    ## Verification
    
    Targeted coverage for this layer lives in:
    
    - `codex-rs/app-server-protocol/src/protocol/v2/tests.rs`
    - `codex-rs/app-server/tests/suite/v2/thread_start.rs`
    - `codex-rs/app-server/tests/suite/v2/thread_resume.rs`
    - `codex-rs/app-server/tests/suite/v2/turn_start.rs`
    - `codex-rs/core/src/session/tests.rs`
    
    The key regression checks exercise that:
    
    - `runtimeWorkspaceRoots` resolve against the effective cwd on thread
    start.
    - Profile-declared workspace roots are excluded from the runtime
    workspace roots returned by app-server.
    - A turn-level runtime workspace-root update persists onto the thread
    and is returned by `thread/resume`.
    - A named permission profile selected on one turn remains symbolic so a
    later runtime-root-only turn update changes the actual sandbox writes.
    - A cwd-only turn update retargets the implicit runtime cwd root while
    preserving additional runtime roots.
    - The protocol fixtures and generated client artifacts stay in sync with
    the string-based permission selection contract.
    
    
    
    
    
    
    
    
    
    
    
    ---
    [//]: # (BEGIN SAPLING FOOTER)
    Stack created with [Sapling](https://sapling-scm.com). Best reviewed
    with [ReviewStack](https://reviewstack.dev/openai/codex/pull/22611).
    * #22612
    * __->__ #22611
  • permissions: resolve profile identity with constraints (#22683)
    ## Why
    
    This PR is the invariant-cleanup layer that follows the workspace-roots
    base merged in [#22610](https://github.com/openai/codex/pull/22610).
    
    #22610 adds `[permissions.<id>.workspace_roots]` and keeps runtime
    workspace roots separate from the raw permission profile, but its
    in-memory representation is intentionally transitional: `Permissions`
    still carries the selected profile identity next to a constrained
    `PermissionProfile`. That makes APIs such as
    `set_constrained_permission_profile_with_active_profile()` fragile
    because the id and value only mean the right thing when every caller
    keeps them in sync.
    
    This PR introduces a single resolved profile state so profile identity,
    `extends`, the profile value, and profile-declared workspace roots
    travel together. The next PR,
    [#22611](https://github.com/openai/codex/pull/22611), builds on this by
    changing the app-server turn API to select permission profiles by id
    plus runtime workspace roots.
    
    ## Stack Context
    
    - #22610, now merged: adds profile-declared `workspace_roots`, runtime
    workspace roots, and `:workspace_roots` materialization.
    - This PR: replaces the parallel active-profile/profile-value fields
    with `PermissionProfileState`.
    - #22611: switches app-server turn updates toward profile ids plus
    runtime workspace roots.
    - #22612: updates TUI/exec summaries to show the effective workspace
    roots.
    
    Keeping this separate from #22611 is deliberate: reviewers can validate
    the internal state invariant before reviewing the app-server protocol
    migration.
    
    ## What Changed
    
    - Added `ResolvedPermissionProfile::{Legacy, BuiltIn, Named}` and
    `PermissionProfileState`.
    - Typed built-in profile ids with `BuiltInPermissionProfileId`.
    - Moved selected profile identity and profile-declared workspace roots
    into the resolved state.
    - Replaced `Permissions` parallel profile fields with one
    `permission_profile_state`.
    - Removed `set_constrained_permission_profile_with_active_profile()`
    from session sync paths.
    - Kept trusted session replay/`SessionConfigured` compatibility through
    explicit session snapshot helpers.
    - Updated session configuration, MCP initialization, app-server, exec,
    TUI, and guardian call sites to consume `&PermissionProfile` directly.
    
    ## Review Guide
    
    Start with `codex-rs/core/src/config/resolved_permission_profile.rs`; it
    is the new invariant boundary. Then review
    `codex-rs/core/src/config/mod.rs` to see how config loading records
    active profile identity and profile workspace roots. The remaining
    call-site changes are mostly mechanical fallout from
    `Permissions::permission_profile()` returning `&PermissionProfile`
    instead of `&Constrained<PermissionProfile>`.
    
    ## Verification
    
    The existing config/session coverage now constructs and asserts through
    `PermissionProfileState`. The workspace-root config test also asserts
    that profile-declared roots are preserved in the resolved state, which
    is the behavior #22611 relies on when runtime roots become mutable
    through the app-server API.
    
    ---
    [//]: # (BEGIN SAPLING FOOTER)
    Stack created with [Sapling](https://sapling-scm.com). Best reviewed
    with [ReviewStack](https://reviewstack.dev/openai/codex/pull/22683).
    * #22612
    * #22611
    * __->__ #22683
  • permissions: support workspace roots in profiles (#22610)
    ## Why
    
    This is the configuration/model half of the alternative permissions
    migration we discussed as a comparison point for
    [#22401](https://github.com/openai/codex/pull/22401) and
    [#22402](https://github.com/openai/codex/pull/22402).
    
    The old `workspace-write` model mixes three concerns that we want to
    keep separate:
    - reusable profile rules that should stay immutable once selected
    - user/runtime workspace roots from `cwd`, `--add-dir`, and legacy
    workspace-write config
    - internal Codex writable roots such as memories, which should not be
    shown as user workspace roots
    
    This PR gives permission profiles first-class `workspace_roots` so users
    can opt multiple repositories into the same `:workspace_roots` rules
    without using broad absolute-path write grants. It also starts
    separating the raw selected profile from the effective runtime profile
    by making `Permissions` expose explicit accessors instead of public
    mutable fields.
    
    A representative `config.toml` looks like this:
    
    ```toml
    default_permissions = "dev"
    
    [permissions.dev.workspace_roots]
    "~/code/openai" = true
    "~/code/developers-website" = true
    
    [permissions.dev.filesystem.":workspace_roots"]
    "." = "write"
    ".codex" = "read"
    ".git" = "read"
    ".vscode" = "read"
    ```
    
    If Codex starts in `~/code/codex` with that profile selected, the
    effective workspace-root set becomes:
    - `~/code/codex` from the runtime `cwd`
    - `~/code/openai` from the profile
    - `~/code/developers-website` from the profile
    
    The `:workspace_roots` rules are materialized across each root, so
    `.git`, `.codex`, and `.vscode` stay scoped the same way everywhere.
    Runtime additions such as `--add-dir` can still layer on later stack
    entries without mutating the selected profile.
    
    ## Stack Shape
    
    This PR intentionally stops before the profile-identity cleanup in
    [#22683](https://github.com/openai/codex/pull/22683) so the base review
    stays focused on config loading, workspace-root materialization, and
    compatibility with legacy `workspace-write`.
    
    The representation in this PR is therefore transitional: `Permissions`
    carries enough state to distinguish the raw constrained profile from the
    effective runtime profile, and there are still call sites that must keep
    the active profile identity and constrained profile value in sync. The
    follow-up PR replaces that with a single resolved profile state
    (`ResolvedPermissionProfile` / `PermissionProfileState`) that keeps the
    profile id, immutable `PermissionProfile`, and profile-declared
    workspace roots together. That follow-up removes APIs such as
    `set_constrained_permission_profile_with_active_profile()` where
    separate arguments could drift out of sync.
    
    Downstream PRs then build on this base to switch app-server turn updates
    to profile ids plus runtime workspace roots and to finish the
    user-visible summary behavior. Reviewers should judge this PR as the
    workspace-roots foundation, not as the final in-memory shape of selected
    permission profiles.
    
    ## Review Guide
    
    Suggested review order:
    
    1. Start with `codex-rs/core/src/config/mod.rs`.
    This is the main shape change in the base slice. `Permissions` now
    stores a private raw `Constrained<PermissionProfile>` plus runtime
    `workspace_roots`. Callers use `permission_profile()` when they need the
    raw constrained value and `effective_permission_profile()` when they
    need a materialized runtime profile. As noted above,
    [#22683](https://github.com/openai/codex/pull/22683) replaces this
    transitional shape with a resolved profile state that keeps identity and
    profile data together.
    
    2. Review `codex-rs/config/src/permissions_toml.rs` and
    `codex-rs/core/src/config/permissions.rs`.
    These add `[permissions.<id>.workspace_roots]`, resolve enabled entries
    relative to the policy cwd, and keep `:workspace_roots` deny-read glob
    patterns symbolic until the actual roots are known.
    
    3. Review `codex-rs/protocol/src/permissions.rs` and
    `codex-rs/protocol/src/models.rs`.
    These add the policy/profile materialization helpers that expand exact
    `:workspace_roots` entries and scoped deny-read globs over every
    workspace root. This is also where `ActivePermissionProfileModification`
    is removed from the core model.
    
    4. Review the legacy bridge in
    `Config::load_from_base_config_with_overrides` and
    `Config::set_legacy_sandbox_policy`.
    This is where legacy `workspace-write` roots become runtime workspace
    roots, while Codex internal writable roots stay internal and do not
    appear as user-facing workspace roots.
    
    5. Then skim downstream call sites.
    The interesting pattern is raw-vs-effective access: state/proxy/bwrap
    paths keep the raw constrained profile, while execution, summaries, and
    user-visible status use the effective profile and workspace-root list.
    
    ## What Changed
    
    - added `[permissions.<id>.workspace_roots]` to the config model and
    schema
    - added runtime `workspace_roots` state to `Config`/`Permissions` and
    `ConfigOverrides`
    - made `Permissions` profile fields private and replaced direct mutation
    with accessors/setters
    - added `PermissionProfile` and `FileSystemSandboxPolicy` helpers for
    materializing `:workspace_roots` exact paths and deny-read globs across
    all roots
    - moved legacy additional writable roots into runtime workspace-root
    state instead of active profile modifications
    - removed `ActivePermissionProfileModification` and its app-server
    protocol/schema export
    - updated sandbox/status summary paths so internal writable roots are
    not reported as user workspace roots
    
    ## Verification Strategy
    
    The targeted tests cover the behavior at the layers where regressions
    are most likely:
    - `codex-rs/core/src/config/config_tests.rs` verifies config loading,
    legacy workspace-root seeding, effective profile materialization, and
    memory-root handling.
    - `codex-rs/core/src/config/permissions_tests.rs` verifies profile
    `workspace_roots` parsing and `:workspace_roots` scoped/glob
    compilation.
    - `codex-rs/protocol/src/permissions.rs` unit tests verify exact and
    glob materialization over multiple workspace roots.
    - `codex-rs/tui/src/status/tests.rs` and
    `codex-rs/utils/sandbox-summary/src/sandbox_summary.rs` verify the
    user-facing summaries show effective workspace roots and hide internal
    writes.
    
    I also ran `cargo check --tests` locally after the latest stack refresh
    to catch cross-crate API breakage from the private-field/accessor
    changes.
    
    
    
    
    
    
    
    ---
    [//]: # (BEGIN SAPLING FOOTER)
    Stack created with [Sapling](https://sapling-scm.com). Best reviewed
    with [ReviewStack](https://reviewstack.dev/openai/codex/pull/22610).
    * #22612
    * #22611
    * #22683
    * __->__ #22610
  • [codex] Remove experimental instructions file config (#22724)
    ## Summary
    
    Remove the deprecated `experimental_instructions_file` config setting
    from the typed config surface and the remaining deprecation-notice
    plumbing. `model_instructions_file` remains the supported setting and
    its loading path is unchanged.
    
    The setting was deprecated when it was renamed to
    `model_instructions_file` on January 20, 2026 in
    https://github.com/openai/codex/pull/9555.
    
    ## Changes
    
    - Remove `experimental_instructions_file` from `ConfigToml` and
    `ConfigProfile`.
    - Delete the custom config-layer scan and session deprecation notice for
    the removed setting.
    - Stop clearing the removed field from generated session config locks.
    - Remove the obsolete deprecation-notice test case while keeping
    `model_instructions_file` coverage intact.
    
    ## Validation
    
    - `just write-config-schema`
    - `just fmt`
    - `cargo test -p codex-config`
    - `cargo test -p codex-core model_instructions_file`
    - `just fix -p codex-core`
    - `git diff --check`
    
    Co-authored-by: Codex <noreply@openai.com>
  • feat: move extension scope ids into ExtensionData (#22490)
    ## Summary
    - add a scoped level_id to ExtensionData and expose it through
    level_id()
    - remove thread_id/turn_id parameters from extension contributor inputs
    where the scoped ExtensionData already carries that identity
    - move turn-scoped extension data onto TurnContext so token usage and
    lifecycle contributors can share the same turn store
    
    ## Testing
    - cargo check -p codex-extension-api -p codex-core --tests
    - cargo test -p codex-extension-api
    - cargo test -p codex-guardian
    - cargo test -p codex-core --lib
    record_token_usage_info_notifies_extension_contributors
    - cargo test -p codex-core --lib
    submission_loop_channel_close_emits_thread_stop_lifecycle
    - cargo test -p codex-core --lib
    submission_loop_channel_close_aborts_active_turn_before_thread_stop_lifecycle
    - just fix -p codex-extension-api
    - just fix -p codex-guardian
    - just fix -p codex-core
    - just fmt
    
    ## Note
    - Attempted cargo test -p codex-core; it aborted in
    agent::control::tests::spawn_agent_fork_last_n_turns_keeps_only_recent_turns
    with the existing stack overflow before the full suite completed.
  • feat: add thread lifecycle contributor hooks (#22476)
    ## Why
    
    Extensions that need thread-scoped state currently only get a start-time
    callback. That is enough for seeding stores, but it leaves the host
    without a shared extension seam for later thread rehydrate and flush
    work as thread ownership evolves. This PR turns that start-only seam
    into a host-owned thread lifecycle contributor contract so
    extension-private state can stay behind the extension API instead of
    leaking extra orchestration through core.
    
    ## What changed
    
    - Replaced `ThreadStartContributor` with `ThreadLifecycleContributor`
    and added typed lifecycle inputs for thread start, resume, and stop. The
    contract lives in
    [`contributors/thread_lifecycle.rs`](https://github.com/openai/codex/blob/d0e9211f70e58d6b07ef07e84f359d1b9aa25955/codex-rs/ext/extension-api/src/contributors/thread_lifecycle.rs#L1-L64).
    - Kept the existing start-time behavior intact by routing session
    construction through `on_thread_start`.
    - Invoked `on_thread_stop` during session shutdown before thread-scoped
    extension state is dropped, while isolating contributor failures behind
    warning logs.
    - Migrated `git-attribution` and `guardian` onto the lifecycle
    registration path.
    - Renamed the extension registry plumbing from start-specific
    contributors to lifecycle-specific contributors.
    
    ## Notes
    
    `on_thread_resume` is introduced at the API boundary here so extensions
    can target the final lifecycle shape; host resume dispatch can be wired
    where that runtime path is finalized.
  • feat: guardian as an extension (contributors part) (#22216)
    Part 1 of guardian as extension. This bind all the logic to spawn
    another agent from an extension and it adds `ThreadId` in the start
    thread collaborator
  • [elicitation] Advertise new url elicitation capability when auth_elicitation is enabled. (#22188)
    ## Why
    
    We've added support for auth elicitation behind the auth_elicitation
    flag, but servers need to explicitly check the capability before it
    decides to send elicitations in order to be backward compatible. This PR
    adds the capability advertising conditioned on the flag.
    
    ## What changed
    
    - Build `client_elicitation_capability` from the `AuthElicitation`
    feature state.
    - Thread that capability through MCP config, session startup, and
    `McpConnectionManager` so RMCP initialization advertises the correct
    elicitation support.
    - Advertise both `form` and `url` elicitation when the feature is
    enabled, and preserve the empty default capability when it is disabled.
    - Add coverage for the feature-derived config shape and the advertised
    initialization payload.
    
    ## Testing
    
    - `cargo test -p codex-mcp`
    - `cargo test -p codex-core
    to_mcp_config_preserves_auth_elicitation_feature_from_config`
    - `cargo test -p codex-core` *(currently fails outside this change in
    `tools::handlers::multi_agents::tests::tool_handlers_cascade_close_and_resume_and_keep_explicitly_closed_subtrees_closed`
    with a stack overflow after unrelated tests have started running)*
  • extension: wire extension registries into sessions (#21737)
    ## Why
    
    [#21736](https://github.com/openai/codex/pull/21736) introduces the
    typed extension API, but the runtime does not yet carry a registry
    through thread/session startup or give contributors host-owned stores to
    read from. This PR wires that host-side path so later feature migrations
    can move product-specific behavior behind typed contributions without
    adding another bespoke seam directly to `codex-core`.
    
    ## What changed
    
    - Thread `ExtensionRegistry<Config>` through `ThreadManager`,
    `CodexSpawnArgs`, `Session`, and sub-agent spawn paths.
    - Wire `ThreadStartContributor` and `ContextContributor`
    - Expose the small supporting surface needed by non-core callers that
    construct threads directly, including `empty_extension_registry()`
    through `codex-core-api`.
    
    This PR lands the host plumbing only: the app-server registry is still
    empty, and concrete feature migrations are intended to follow
    separately.
  • Reapply "Move skills watcher to app-server" (#21652)
    ## Why
    
    PR #21460 reverted the earlier move of skills change watching from
    `codex-core` into app-server. This reapplies that boundary change so
    app-server owns client-facing `skills/changed` notifications and core no
    longer carries the watcher.
    
    ## What
    
    - Restore the app-server `SkillsWatcher` and register it from thread
    listener setup.
    - Remove the core-owned skills watcher and its core live-reload
    integration surface.
    - Restore app-server coverage for `skills/changed` notifications after a
    watched skill file changes.
    
    ## Validation
    
    - `cargo test -p codex-app-server --test all
    suite::v2::skills_list::skills_changed_notification_is_emitted_after_skill_change
    -- --exact --nocapture`
    - `cargo test -p codex-core --lib --no-run`
  • [codex] request desktop attestation from app (#20619)
    ## Summary
    
    TL;DR: teaches `codex-rs` / app-server to request a desktop-provided
    attestation token and attach it as `x-oai-attestation` on the scoped
    ChatGPT Codex request paths.
    
    ![DeviceCheck attestation
    interface](https://raw.githubusercontent.com/openai/codex/dev/jm/devicecheck-diagram-assets/pr-assets/devicecheck-attestation-interface.png)
    
    ## Details
    
    This PR teaches the Codex app-server runtime how to request and attach
    an attestation token. It does not generate DeviceCheck tokens directly;
    instead, it relies on the connected desktop app to advertise that it can
    generate attestation and then asks that app for a fresh header value
    when needed.
    
    The flow is:
    
    1. The Codex desktop app connects to app-server.
    2. During `initialize`, the app can advertise that it supports
    `requestAttestation`.
    3. Before app-server calls selected ChatGPT Codex endpoints, it sends
    the internal server request `attestation/generate` to the app.
    4. app-server receives a pre-encoded header value back.
    5. app-server forwards that value as `x-oai-attestation` on the scoped
    outbound requests.
    
    The code in this repo is mostly protocol and runtime plumbing: it adds
    the app-server request/response shape, introduces an attestation
    provider in core, wires that provider into Responses / compaction /
    realtime setup paths, and covers the intended scoping with tests. The
    signed macOS DeviceCheck generation remains owned by the desktop app PR.
    
    ## Related PR
    
    - Codex desktop app implementation:
    https://github.com/openai/openai/pull/878649
    
    ## Validation
    
    <details>
    <summary>Tests run</summary>
    
    ```sh
    cargo test -p codex-app-server-protocol
    cargo test -p codex-core attestation --lib
    cargo test -p codex-app-server --lib attestation
    ```
    
    Also ran:
    
    ```sh
    just fix -p codex-core
    just fix -p codex-app-server
    just fix -p codex-app-server-protocol
    just fmt
    just write-app-server-schema
    ```
    
    </details>
    
    <details>
    <summary>E2E DeviceCheck validation</summary>
    
    First validated the signed desktop app boundary directly: launched a
    packaged signed `Codex.app`, sent `attestation/generate`, decoded the
    returned `v1.` attestation header, and validated the extracted
    DeviceCheck token with `personal/jm/verify_devicecheck_token.py` using
    bundle ID `com.openai.codex`. Apple returned `status_code: 200` and
    `is_ok: true`.
    
    Then ran the fuller app + app-server flow. The packaged `Codex.app`
    launched a current-branch app-server via `CODEX_CLI_PATH`, and a local
    MITM proxy intercepted outbound `chatgpt.com` traffic. The app-server
    requested `attestation/generate` from the real Electron app process, and
    the intercepted `/backend-api/codex/responses` traffic included
    `x-oai-attestation` on both routes:
    
    ```text
    GET  /backend-api/codex/responses  Upgrade: websocket  x-oai-attestation: present
    POST /backend-api/codex/responses  Upgrade: none       x-oai-attestation: present
    ```
    
    The captured header decoded to a DeviceCheck token that also validated
    with Apple for `com.openai.codex` (`status_code: 200`, `is_ok: true`,
    team `2DC432GLL2`).
    
    </details>
    
    ---------
    
    Co-authored-by: Codex <noreply@openai.com>
  • Move thread name edits to ThreadStore (#21264)
    - Route live thread renames through `ThreadStore` metadata updates.
    - Read resumed thread names from store metadata with legacy local
    fallback preserved in the store.
  • feat: make built-in MCPs first-class runtime servers (#21356)
    ## DISCLAIMER
    This is experimental and no production service must rely on this
    
    ## Why
    
    Built-in MCPs are product-owned runtime capabilities, but they were
    previously flattened into the same config-backed stdio path as
    user-configured servers. That made them depend on a hidden `codex
    builtin-mcp` re-exec path, exposed them through config-oriented CLI
    flows, and erased distinctions the runtime needs to preserve—most
    notably whether an MCP call should count as external context for
    memory-mode pollution.
    
    ## What changed
    
    - Model product-owned built-ins separately from config-backed MCP
    servers via `BuiltinMcpServer` and `EffectiveMcpServer`.
    - Launch built-ins in process through a reusable async transport instead
    of the hidden `builtin-mcp` stdio subcommand.
    - Keep config-oriented CLI operations such as `codex mcp
    list/get/login/logout` scoped to configured servers, while merging
    built-ins only into the effective runtime server set.
    - Retain server metadata after launch so parallel-tool support and
    context classification come from the live server set; built-in
    `memories` is now classified as local Codex state rather than external
    context.
    
    ## Test plan
    
    - `cargo test -p codex-mcp`
    - `cargo test -p codex-core --test suite
    builtin_memories_mcp_call_does_not_mark_thread_memory_mode_polluted_when_configured`
    
    ---------
    
    Co-authored-by: Codex <noreply@openai.com>
  • Revert state DB injection and agent graph store (#21481)
    ## Why
    
    Reverts #20689 to restore the previous optional state DB plumbing. The
    conflict resolution keeps the newer installation ID and session/thread
    identity changes that landed after #20689, while removing the mandatory
    state DB and agent graph store dependency from ThreadManager
    construction.
    
    ## What changed
    
    - Restored `Option<StateDbHandle>` through app-server, MCP server,
    prompt debug, and test entry points.
    - Removed the `codex-core` dependency on `codex-agent-graph-store` and
    reverted descendant lookup back to the existing state DB path when
    available.
    - Kept newer `installation_id` forwarding by passing it beside the
    optional DB handle.
    - Kept local thread-name updates working when the optional state DB
    handle is absent.
    
    ## Validation
    
    - `git diff --check`
    - `cargo test -p codex-thread-store`
    - `cargo test -p codex-state -p codex-rollout -p
    codex-app-server-protocol`
    - Attempted `env CARGO_INCREMENTAL=0 cargo test -p codex-core -p
    codex-app-server -p codex-app-server-client -p codex-mcp-server -p
    codex-thread-manager-sample -p codex-tui`; blocked locally by a rustc
    ICE while compiling `v8 v146.4.0` with `rustc 1.93.0 (254b59607
    2026-01-19)` on `aarch64-apple-darwin`.