213 lines
4.3 KiB
YAML
213 lines
4.3 KiB
YAML
microscopes:
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OPM:
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daq:
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hardware:
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type: NI
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sample_rate: 100000
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master_trigger_out_line: PXI6723/port0/line1
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camera_trigger_out_line: /PXI6723/ctr0
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trigger_source: /PXI6723/PFI0
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laser_port_switcher: PXI6723/port0/line0
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laser_switch_state: False
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camera:
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hardware:
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type: HamamatsuOrca
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serial_number: 000646
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defect_correct_mode: 2.0
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delay: 10.0 #ms
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settle_down: 0.0 #ms
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flip_x: False
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flip_y: False
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remote_focus_device:
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hardware:
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type: SyntheticRemoteFocus
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channel: PXI6723/ao2
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min: 0
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max: 5
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galvo:
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-
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hardware:
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type: NI
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channel: PXI6723/ao0
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min: -10
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max: 10
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waveform: sine
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phase: 1.57079
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filter_wheel:
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hardware:
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type: ASI
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wheel_number: 1
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port: COM13
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baudrate: 115200
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filter_wheel_delay: .030
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available_filters:
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Empty-Alignment: 0
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GFP - FF01-515/30-32: 1
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RFP - FF01-595/31-32: 2
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Far-Red - BLP01-647R/31-32: 3
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Blocked1: 4
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Blocked2: 5
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Blocked3: 6
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Blocked4: 7
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Blocked5: 8
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Blocked6: 9
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stage:
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hardware:
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-
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type: ASI
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serial_number: 123456789
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axes: [x, y, f]
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axes_mapping: [X, Y, Z]
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volts_per_micron: None
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max: None
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min: None
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port: COM13
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baudrate: 115200
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timeout: 0.25
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-
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type: GalvoNIStage
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serial_number: 987654321
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axes: [z]
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axes_mapping: [ PXI6723/ao1 ]
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volts_per_micron: 0.05*x
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distance_threshold: None
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settle_duration_ms: 20 #ms
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max: 10
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min: -10
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-
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type: SyntheticStage
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serial_number: 123
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axes: [theta]
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axes_mapping: [theta]
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max: 360
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min: 0
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joystick_axes: [x, y, z]
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x_max: 100000
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x_min: -100000
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y_max: 100000
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y_min: -100000
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z_max: 100000
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z_min: -100000
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f_max: 100000
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f_min: -100000
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theta_max: 360
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theta_min: 0
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x_offset: 0
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y_offset: 0
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z_offset: 0
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theta_offset: 0
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f_offset: 0
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flip_x: False
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flip_y: False
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flip_z: False
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zoom:
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hardware:
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type: SyntheticZoom
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servo_id: 1
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position:
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0.63x: 0
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1x: 627
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2x: 1711
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3x: 2301
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4x: 2710
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5x: 3079
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6x: 3383
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pixel_size:
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0.63x: 9.7
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1x: 6.38
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2x: 3.14
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3x: 2.12
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4x: 1.609
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5x: 1.255
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6x: 1.044
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stage_positions:
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BABB:
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f:
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0.63x: 0
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1x: 1
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2x: 2
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3x: 3
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4x: 4
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5x: 5
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6x: 6
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shutter:
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hardware:
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type: SyntheticShutter #NI
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channel: PXI6723/port0/line0
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min: 0
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max: 5
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lasers:
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- wavelength: 405
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onoff:
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hardware:
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type: NI
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channel: PCI6321/port0/line3
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min: 0
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max: 5
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power: #analog
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hardware:
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type: SyntheticLaser
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channel: PCI6321/ao1
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min: 0
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max: 5
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type: LuxX
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- wavelength: 488
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onoff: #digital
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hardware:
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type: NI
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channel: PCI6321/port0/line5
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min: 0
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max: 5
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power: #analog
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hardware:
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type: SyntheticLaser
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channel: PCI6321/ao0
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min: 0
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max: 5
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type: LuxX
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- wavelength: 561
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onoff:
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hardware:
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type: NI
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channel: PCI6321/port0/line7
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min: 0
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max: 5
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power: #analog
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hardware:
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type: SyntheticLaser
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channel: PCI6321/ao1
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min: 0
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max: 5
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type: Obis
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- wavelength: 640
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onoff: #digital
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hardware:
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type: NI
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channel: PCI6321/port0/line1
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min: 0
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max: 5
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power: #analog
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hardware:
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type: SyntheticLaser
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channel: PCI6321/ao2
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min: 0
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max: 5
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type: LuxX
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gui:
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channels:
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count: 5
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