# Copyright (c) 2021-2025 The University of Texas Southwestern Medical Center. # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted for academic and research use only (subject to the # limitations in the disclaimer below) provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, # this list of conditions and the following disclaimer. # * Redistributions in binary form must reproduce the above copyright # notice, this list of conditions and the following disclaimer in the # documentation and/or other materials provided with the distribution. # * Neither the name of the copyright holders nor the names of its # contributors may be used to endorse or promote products derived from this # software without specific prior written permission. # NO EXPRESS OR IMPLIED LICENSES TO ANY PARTY'S PATENT RIGHTS ARE GRANTED BY # THIS LICENSE. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND # CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT # LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A # PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR # CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, # EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, # PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER # IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) # ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE # POSSIBILITY OF SUCH DAMAGE. # Standard library imports import unittest # Third party imports import numpy as np # Local imports from navigate.model.features.autofocus import power_tent from navigate.model.features.autofocus import Autofocus from test.model.dummy import DummyModel class TestPowerTentFunction(unittest.TestCase): def test_power_tent(self): # Test with known parameters and expected result x = 2.0 x_offset = 1.0 y_offset = 0.0 amplitude = 2.0 sigma = 0.5 alpha = 2.0 # Calculate the expected result manually expected_result = y_offset + amplitude * ( 1 - np.abs(sigma * (x - x_offset)) ** alpha ) # Call the function and check if the result is close to the expected result result = power_tent(x, x_offset, y_offset, amplitude, sigma, alpha) self.assertAlmostEqual(result, expected_result, places=6) def test_power_tent_boundary_cases(self): # Test some boundary cases x_offset = 0.0 y_offset = 0.0 amplitude = 1.0 sigma = 1.0 alpha = 1.0 # Test at x = x_offset, should be y_offset + amplitude result = power_tent(x_offset, x_offset, y_offset, amplitude, sigma, alpha) self.assertAlmostEqual(result, y_offset + amplitude, places=6) # Test at x = x_offset + 1, should be y_offset result = power_tent(x_offset + 1, x_offset, y_offset, amplitude, sigma, alpha) self.assertAlmostEqual(result, y_offset, places=6) class TestAutofocusClass(unittest.TestCase): def setUp(self): # Initialize an instance of the Autofocus class for testing model = DummyModel() model.active_microscope_name = "Mesoscale" self.autofocus = Autofocus(model=model, device="stage", device_ref="f") def test_get_autofocus_frame_num(self): # Test the get_autofocus_frame_num method settings = { "coarse_selected": True, "coarse_range": 8.0, "coarse_step_size": 2.0, "fine_selected": True, "fine_range": 5.0, "fine_step_size": 1.0, } self.autofocus.model.configuration = { "experiment": { "AutoFocusParameters": {"Mesoscale": {"stage": {"f": settings}}} } } # Both Fine and Coarse Selected frames = self.autofocus.get_autofocus_frame_num() self.assertEqual(frames, 11) # Expected number of frames # Only Coarse Selected self.autofocus.model.configuration["experiment"]["AutoFocusParameters"][ "Mesoscale" ]["stage"]["f"]["fine_selected"] = False self.autofocus.model.configuration["experiment"]["AutoFocusParameters"][ "Mesoscale" ]["stage"]["f"]["coarse_selected"] = True frames = self.autofocus.get_autofocus_frame_num() self.assertEqual(frames, 5) # Expected number of frames # Only Fine Selected self.autofocus.model.configuration["experiment"]["AutoFocusParameters"][ "Mesoscale" ]["stage"]["f"]["fine_selected"] = True self.autofocus.model.configuration["experiment"]["AutoFocusParameters"][ "Mesoscale" ]["stage"]["f"]["coarse_selected"] = False frames = self.autofocus.get_autofocus_frame_num() self.assertEqual(frames, 6) # Expected number of frames def test_get_steps(self): # Test the get_steps method steps, pos_offset = self.autofocus.get_steps(10.0, 2.0) self.assertEqual(steps, 6) # Expected number of steps self.assertEqual(pos_offset, 8.0) # Expected position offset if __name__ == "__main__": unittest.main()