# Copyright (c) 2021-2025 The University of Texas Southwestern Medical Center. # All rights reserved. # Redistribution and use in source and binary forms, with or without # modification, are permitted for academic and research use only (subject to the # limitations in the disclaimer below) provided that the following conditions are met: # * Redistributions of source code must retain the above copyright notice, # this list of conditions and the following disclaimer. # * Redistributions in binary form must reproduce the above copyright # notice, this list of conditions and the following disclaimer in the # documentation and/or other materials provided with the distribution. # * Neither the name of the copyright holders nor the names of its # contributors may be used to endorse or promote products derived from this # software without specific prior written permission. # NO EXPRESS OR IMPLIED LICENSES TO ANY PARTY'S PATENT RIGHTS ARE GRANTED BY # THIS LICENSE. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND # CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT # LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A # PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR # CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, # EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, # PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER # IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) # ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE # POSSIBILITY OF SUCH DAMAGE. # Standard Library Imports # Third Party Imports import pytest import numpy as np # Local Imports from navigate.model.devices.remote_focus.synthetic import SyntheticRemoteFocus from test.model.dummy import DummyModel def test_remote_focus_base_init(): model = DummyModel() microscope_name = model.configuration["experiment"]["MicroscopeState"][ "microscope_name" ] SyntheticRemoteFocus(microscope_name, None, model.configuration) @pytest.mark.parametrize("smoothing", [0] + list(np.random.rand(5) * 100)) def test_remote_focus_base_adjust(smoothing): from test.model.dummy import DummyModel model = DummyModel() microscope_name = model.configuration["experiment"]["MicroscopeState"][ "microscope_name" ] microscope_state = model.configuration["experiment"]["MicroscopeState"] waveform_constants = model.configuration["waveform_constants"] imaging_mode = microscope_state["microscope_name"] zoom = microscope_state["zoom"] for channel_key in microscope_state["channels"].keys(): # channel includes 'is_selected', 'laser', 'filter', 'camera_exposure'... channel = microscope_state["channels"][channel_key] # Only proceed if it is enabled in the GUI if channel["is_selected"] is True: laser = channel["laser"] waveform_constants["remote_focus_constants"][imaging_mode][zoom][laser][ "percent_smoothing" ] = smoothing channel["camera_exposure_time"] = np.random.rand() * 150 + 50 rf = SyntheticRemoteFocus(microscope_name, None, model.configuration) # exposure_times = { # k: v["camera_exposure_time"] / 1000 # for k, v in microscope_state["channels"].items() # } # sweep_times = { # k: 2 * v["camera_exposure_time"] / 1000 # for k, v in microscope_state["channels"].items() # } ( exposure_times, sweep_times, ) = model.active_microscope.calculate_exposure_sweep_times() waveform_dict = rf.adjust(exposure_times, sweep_times) for k, v in waveform_dict.items(): try: channel = microscope_state["channels"][k] if not channel["is_selected"]: continue assert np.all(v <= rf.remote_focus_max_voltage) assert np.all(v >= rf.remote_focus_min_voltage) assert len(v) == int(sweep_times[k] * rf.sample_rate) except KeyError: # The channel doesn't exist. Points to an issue in how waveform dict # is created. continue