feat: init

docs/source/05_reference/implementations/configurations/configuration_OPMv2.yaml

@@ -0,0 +1,164 @@
+# Only one microscope can be active in the GUI at a time, but all microscopes will be accessible
+microscopes:
+  OPMv2:
+    daq:
+      hardware:
+        type: NI
+
+      # NI PCIe-1073 Chassis with PXI-6259 and PXI-6733 DAQ Boards.
+      # Sampling rate in Hz
+      sample_rate: 100000
+
+      # triggers
+      master_trigger_out_line: /Dev5/port0/line1
+      camera_trigger_out_line: /Dev5/ctr0
+      trigger_source: /Dev5/PFI0
+
+    zoom:
+      hardware:
+        type: SyntheticZoom
+        servo_id: 1
+      position:
+        1x: 0
+      pixel_size:
+        1x: 0.15
+    shutter:
+      hardware:
+        type: SyntheticShutter
+        channel: none/line0
+    camera:
+      hardware:
+        name: camera
+        type: HamamatsuOrca
+        serial_number: 304064
+      defect_correct_mode: 2.0
+      delay: 7.5 #ms
+      settle_down: 0.0 #ms
+    remote_focus_device:
+      hardware:
+        type: NI
+        channel: Dev5/ao3
+        min: 0
+        max: 5
+      # Optotune EL-16-40-TC-VIS-5D-1-C
+    galvo:
+      # -
+      #   name: xgalvo
+      #   hardware:
+      #     name: daq
+      #     type: NI
+      #     channel: Dev5/ao0
+      #     min: -5
+      #     max: 5
+      #   frequency: 99.9
+      #   amplitude: 2.5
+      #   offset: 0
+      #   duty_cycle: 50
+      #   phase: 1.57079 # pi/2
+      -
+        name: ygalvo
+        hardware:
+          type: NI
+          channel: Dev5/ao1
+          min: -5
+          max: 5
+        phase: 1.57079 # pi/2
+      -
+        name: sheargalvo
+        hardware:
+          name: daq
+          type: NI
+          channel: Dev5/ao2
+          min: -5
+          max: 5
+        phase: 1.57079 # pi/2
+    stage:
+      hardware:
+        -
+          name: fake_stage
+          type: SyntheticStage
+          serial_number: 123
+          axes: [x,y,theta,f]
+        -
+          name: galvo-stage
+          type: GalvoNIStage
+          serial_number: 123
+          axes: [z]
+          axes_mapping: [Dev5/ao0]
+          min: -5
+          max: 5
+          volts_per_micron: 0.01*x + 0
+
+      x_max: 500
+      x_min: -500
+      y_max: 500
+      y_min: -500
+      z_max: 500
+      z_min: -500
+      f_max: 100000
+      f_min: -100000
+      theta_max: 360
+      theta_min: 0
+
+      x_offset: 0
+      y_offset: 0
+      z_offset: 0
+      f_offset: 0
+      theta_offset: 0
+    filter_wheel:
+      hardware:
+        type: SyntheticFilterWheel
+        wheel_number: 1
+        port: COM6
+        baudrate: 9600
+      filter_wheel_delay: .030 # in seconds
+      available_filters:
+        FRFP - BLP01-664R-25: 0
+        RFP - FF01-598/25-25: 1
+        GFP - 527/20: 2
+        GFPRFP - ZET488/561m: 3
+        Empty-Alignment: 4
+        Blocked2: 5
+        Blocked3: 6
+        Blocked4: 7
+        Blocked5: 8
+        Blocked6: 9
+    lasers:
+      # Omicron LightHub Ultra
+      # 488 and 640 are LuxX+ Lasers
+      # 561 is a Coherent OBIS Laser
+      # Digital Laser Outputs
+      - wavelength: 488
+        power:
+          hardware:
+            type: NI
+            channel: Dev5/ao12
+            min: 0
+            max: 5
+        type: LuxX
+      - wavelength: 562
+        onoff:
+          hardware:
+            type: NI
+            channel: Dev5/port1/line5
+            min: 0
+            max: 5
+        power:
+          hardware:
+            type: NI
+            channel: Dev5/ao13
+            min: 0
+            max: 5
+        type: Obis
+      - wavelength: 642
+        power:
+          hardware:
+            type: NI
+            channel: Dev5/ao14
+            min: 0
+            max: 5
+        type: LuxX
+
+gui:
+  channels:
+    count: 5