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## Summary - Add v2 `skills/extraRoots/set` to replace app-server process-local standalone skill roots. The setting is not persisted, accepts missing roots, and `extraRoots: []` clears the runtime set. - Wire runtime roots into core skill discovery for `skills/list` and turn loads, clear skill caches on set, and register the roots with the skills watcher so later filesystem changes emit `skills/changed`. - Update app-server docs, generated JSON/TypeScript schemas, and coverage for serialization, missing roots, empty clears, and restart behavior. ## Testing - `cargo test -p codex-app-server-protocol` - `cargo test -p codex-core-skills` - `cargo test -p codex-app-server skills_extra_roots_set_updates_process_runtime_roots` - `just fix -p codex-app-server-protocol` - `just fix -p codex-core-skills` - `just fix -p codex-app-server`