Commit Graph

127 Commits

  • [codex-analytics] rework thread_source for thread analytics (#20949)
    ## Summary
    - make `thread_source` an explicit optional thread-level field on
    `thread/start`, `thread/fork`, and returned thread payloads
    - persist `thread_source` in rollout/session metadata so resumed live
    threads retain the original value
    - replace the old best-effort `session_source` -> `thread_source`
    mapping with an explicit caller-supplied analytics classification
    
    ## Why
    Before this change, analytics `thread_source` was populated by a
    best-effort mapping from `session_source`. `session_source` describes
    the runtime/client surface, not the actual thread-level origin, so that
    projection was not accurate enough to distinguish cases such as `user`,
    `subagent`, `memory_consolidation`, and future thread origins reliably.
    
    Making `thread_source` explicit keeps one thread-level analytics field
    while letting callers provide the real classification directly instead
    of recovering it indirectly from `session_source`.
    
    ## Impact
    For new analytics events, `thread_source` now reflects the explicit
    thread-level classification supplied by the caller rather than an
    inferred value derived from `session_source`. Existing protocol fields
    remain optional; callers that omit `threadSource` now produce `null`
    instead of a best-effort inferred value.
    
    ## Validation
    - `just write-app-server-schema`
    - `cargo test -p codex-analytics -p codex-core -p
    codex-app-server-protocol --no-run`
    - `cargo test -p codex-app-server-protocol
    generated_ts_optional_nullable_fields_only_in_params`
    - `cargo test -p codex-analytics
    thread_initialized_event_serializes_expected_shape`
    - `cargo test -p codex-core
    resume_stopped_thread_from_rollout_preserves_thread_source`
  • [codex] Move thread naming to app server (#21260)
    ## Why
    
    Thread names are app-server metadata now, backed by the thread store and
    sqlite state database. Keeping a core `SetThreadName` op plus a rollout
    `thread_name_updated` event made rename persistence live in the wrong
    layer and required historical replay support for an event that new
    app-server flows should not write.
    
    ## What changed
    
    - Removed `Op::SetThreadName` and `EventMsg::ThreadNameUpdated` from the
    core protocol and deleted the core handler path that appended rename
    events to rollouts.
    - Updated app-server `thread/name/set` so both loaded and unloaded
    threads write through thread-store metadata and app-server emits
    `thread/name/updated` notifications.
    - Updated local thread-store name metadata updates to write sqlite title
    metadata and the legacy thread-name index without appending rollout
    events.
    - Removed state extraction and rollout handling for the deleted
    thread-name event.
    
    ## Validation
    
    - `cargo test -p codex-app-server thread_name_updated_broadcasts`
    - `cargo test -p codex-app-server
    thread_name_set_is_reflected_in_read_list_and_resume`
    - `cargo test -p codex-thread-store
    update_thread_metadata_sets_name_on_active_rollout_and_indexes_name`
    - `cargo test -p codex-state`
    - `cargo check -p codex-mcp-server -p codex-rollout-trace`
    - `just fix -p codex-app-server -p codex-thread-store -p codex-state -p
    codex-mcp-server -p codex-rollout-trace`
    
    ## Docs
    
    No external documentation update is expected for this internal ownership
    change.
  • codex: route metadata updates through ThreadStore (#20576)
    - Route `thread/metadata/update` through
    `ThreadStore::update_thread_metadata`.
    - Add `LocalThreadStore` git metadata patch support for set, partial
    update, and clear semantics.
    - Add some unit tests for the new thread store code
    - Remove a lot of dead code/tests!
  • Add agent graph store interface (#19229)
    ## Summary
    
    Persisted subagent parent/child topology currently leaks through
    `StateRuntime`'s SQLite-specific thread-spawn helpers. This PR
    introduces a narrow `AgentGraphStore` boundary so follow-up work can
    route graph operations through a local or remote store without coupling
    orchestration code directly to the state DB graph API.
    
    ## Changes
    
    - Adds the new `codex-agent-graph-store` crate.
    - Defines a flat `AgentGraphStore` trait for the v1 graph surface:
    upsert edge, set edge status, list direct children, and list
    descendants.
    - Adds public graph types for `ThreadSpawnEdgeStatus`,
    `AgentGraphStoreError`, and `AgentGraphStoreResult`.
    - Implements `LocalAgentGraphStore` on top of an existing
    `codex_state::StateRuntime`, preserving today's SQLite-backed
    `thread_spawn_edges` behavior.
    - Registers the crate in Cargo/Bazel metadata.
    
    This PR only adds the local contract and implementation; call-site
    migration and the remote gRPC store are left to the follow-up PRs in the
    stack.
    
    ## Testing
    
    - `cargo test -p codex-agent-graph-store`
    
    The new unit tests cover local parity with the existing `StateRuntime`
    graph methods, `Open`/`Closed` filtering, status updates, and stable
    breadth-first descendant ordering.
  • Fix log db batch flush flake (#19959)
    ## Why
    
    The log DB writer batches tracing events before inserting them into
    SQLite, but `tokio::time::interval` produces an immediate first tick.
    That meant the inserter could flush the first accepted log entry before
    `batch_size` was reached, making
    `configured_batch_size_flushes_without_explicit_flush` timing-sensitive
    in CI.
    
    ## What Changed
    
    - Consume the interval's startup tick before entering the inserter loop,
    so interval flushing starts after the configured delay.
    - Remove the test's startup sleep, which was masking the race instead of
    proving the batch-size behavior.
    
    ## Validation
    
    - `cargo test -p codex-state`
    - `cargo test -p codex-state
    configured_batch_size_flushes_without_explicit_flush` passed 3
    consecutive focused runs
    - PR checks passed across `rust-ci`, Bazel, `ci`, `sdk`, `cargo-deny`,
    Codespell, blob-size policy, and CLA
  • feat: trigger memories from user turns with cooldown (#19970)
    ## Why
    
    Memory startup was tied to thread lifecycle events such as create, load,
    and fork. That can run memory work before a thread receives real user
    input, and it makes startup cost scale with thread management instead of
    actual turns. Moving the trigger to `thread/sendInput` keeps memory
    startup aligned with the first real user turn and lets it use the
    current thread config at turn time.
    
    The idea is to prevent ghost cost due to pre-warm triggered by the app
    
    Turn-based startup can also make global phase-2 consolidation easier to
    request repeatedly, so this adds a success cooldown and tightens the
    default startup scan window.
    
    ## What Changed
    
    - Start `codex_memories_write::start_memories_startup_task` after a
    non-empty `thread/sendInput` turn is submitted, instead of from thread
    create/load/fork paths:
    https://github.com/openai/codex/blob/d4a6885b7829e2fd2ec7a09355e4f75ebe1d1fe3/codex-rs/app-server/src/codex_message_processor.rs#L6477-L6487
    - Expose `CodexThread::config()` so app-server can pass the live config
    into memory startup at turn time.
    - Add a six-hour successful-run cooldown for global phase-2
    consolidation via `SkippedCooldown`:
    https://github.com/openai/codex/blob/d4a6885b7829e2fd2ec7a09355e4f75ebe1d1fe3/codex-rs/state/src/runtime/memories.rs#L963-L966
    - Reduce memory startup defaults to at most 2 rollouts over 10 days:
    https://github.com/openai/codex/blob/d4a6885b7829e2fd2ec7a09355e4f75ebe1d1fe3/codex-rs/config/src/types.rs#L31-L34
    
    ## Verification
    
    Updated the memory runtime coverage around phase-2 reclaim behavior,
    including `phase2_global_lock_respects_success_cooldown`.
    
    ---------
    
    Co-authored-by: Codex <noreply@openai.com>
  • Stabilize memory Phase 2 input ordering (#19967)
    ## Why
    
    Phase 2 still needs to choose the most relevant stage-1 memory outputs
    by usage and recency, but exposing that ranking as the rendered
    `raw_memories.md` order creates unnecessary large diff. Usage-count or
    timestamp changes can reshuffle otherwise unchanged memories, making the
    workspace diff noisy and giving the consolidation prompt a misleading
    recency signal from file position.
    This fix will reduce token consumption
    
    ## What Changed
    
    - Keep the existing top-N Phase 2 selection ranking by `usage_count`,
    `last_usage`, `source_updated_at`, and `thread_id`.
    - Return the selected rows in stable ascending `thread_id` order before
    syncing Phase 2 filesystem inputs.
    - Update the memory README, raw memories header, and consolidation
    prompt so they describe the stable order and tell the prompt to use
    metadata and workspace diffs instead of file order as the recency
    signal.
    - Adjust the memory runtime tests to use deterministic thread IDs and
    assert the stable return order separately from the ranked selection
    semantics.
    
    ## Test Coverage
    
    - Existing memory runtime tests in
    `codex-rs/state/src/runtime/memories.rs` now cover the stable returned
    ordering for Phase 2 inputs.
    
    ---------
    
    Co-authored-by: Codex <noreply@openai.com>
  • Avoid rewriting Phase 2 selection on clean workspace (#19812)
    ## Why
    
    Phase 2 can now claim the global consolidation lock on startup even when
    the git-backed memory workspace is already clean. The clean-workspace
    path still finalized through the normal Phase 2 success path, which
    clears and re-marks `selected_for_phase2` rows. That made no-op startups
    perform avoidable writes to `stage1_outputs`, creating unnecessary DB
    I/O and contention when no memory files changed.
    
    ## What Changed
    
    - Added a preserving-selection Phase 2 finalizer in `codex-state` that
    only marks the global job row as succeeded.
    - Kept the existing `mark_global_phase2_job_succeeded` behavior for real
    consolidation runs, where the selected Phase 2 snapshot must be
    rewritten.
    - Switched the `succeeded_no_workspace_changes` branch in
    `core/src/memories/phase2.rs` to use the preserving-selection finalizer.
    - Added a regression test that installs a SQLite trigger on
    `stage1_outputs` and verifies the clean finalizer performs zero updates
    there.
    
    ## Testing
    
    - `cargo test -p codex-state`
    - `cargo test -p codex-core memories::tests::phase2`
  • Allow Phase 2 memory claims after retry exhaustion (#19809)
    ## Why
    
    The Phase 2 memories job row is only the global lock for the git-backed
    memory workspace. Manual memory edits do not enqueue new Stage 1 work,
    so a Phase 2 row with `retry_remaining = 0` could be skipped before the
    worker ever claimed the lock and generated `phase2_workspace_diff.md`.
    
    That left workspace-only changes unconsolidated after repeated failures,
    even when retry backoff had elapsed and the filesystem had real diffable
    work.
    
    ## What Changed
    
    - Allow `try_claim_global_phase2_job` to claim the Phase 2 lock after
    the retry budget is exhausted, while still respecting active `retry_at`
    backoff and fresh running leases.
    - Treat `SkippedRetryUnavailable` for Phase 2 as backoff-only, and
    update the outcome docs to match.
    - Clamp Phase 2 retry bookkeeping at zero when failed attempts are
    recorded.
    
    ## Verification
    
    - Added
    `phase2_global_lock_can_be_claimed_after_retry_budget_is_exhausted` to
    cover the exhausted-budget lock claim path.
    - Ran `cargo test -p codex-state`.
  • feat: use git-backed workspace diffs for memory consolidation (#18982)
    ## Why
    
    This PR make the `morpheus` agent (memory phase 2) use a git diff to
    start it's consolidation. The workflow is the following:
    1. The agent acquire a lock
    2. If `.codex/memories` does not exist or is not a git root, initialize
    everything (and make a first empty commit)
    3. Update `raw_memories.md` and `rollout_summaries/` as before.
    Basically we select max N phase 1 memories based on a given policy
    4. We use git (`gix`) to get a diff between the current state of
    `.codex/memories` and the last commit.
    5. Dump the diff in `phase2_workspace_diff.md`
    6. Spawn `morpheus` and point it to `phase2_workspace_diff.md`
    7. Wait for `morpheus` to be done
    8. Re-create a new `.git` and make one single commit on it. We do this
    because we don't want to preserve history through `.git` and this is
    cheap anyway
    9. We release the lock
    On top of this, we keep the retry policies etc etc
    
    The goals of this new workflow are:
    * Better support of any memory extensions such as `chronicle`
    * Allow the user to manually edit memories and this will be considered
    by the phase 2 agent
     
    As a follow-up we will need to add support for user's edition while
    `morpheus` is running
    
    ## What Changed
    
    - Added memory workspace helpers that prepare the git baseline, compute
    the diff, write `phase2_workspace_diff.md`, and reset the baseline after
    successful consolidation.
    - Updated Phase 2 to sync current inputs into `raw_memories.md` and
    `rollout_summaries/`, prune old extension resources, skip clean
    workspaces, and run the consolidation subagent only when the workspace
    has changes.
    - Tightened Phase 2 job ownership around long-running consolidation with
    heartbeats and an ownership check before resetting the baseline.
    - Simplified the prompt and state APIs so DB watermarks are bookkeeping,
    while workspace dirtiness decides whether consolidation work exists.
    - Updated the memory pipeline README and tests for workspace diffs,
    extension-resource cleanup, pollution-driven forgetting, selection
    ranking, and baseline persistence.
    
    ## Verification
    
    - Added/updated coverage in `core/src/memories/tests.rs`,
    `core/src/memories/workspace_tests.rs`, `state/src/runtime/memories.rs`,
    and `core/tests/suite/memories.rs`.
    
    ---------
    
    Co-authored-by: Codex <noreply@openai.com>
  • Add goal persistence foundation (1 / 5) (#18073)
    Adds the persisted goal foundation for the rest of the stack. This PR is
    intentionally limited to feature flag and state-layer behavior;
    app-server APIs, model tools, runtime continuation, and TUI UX are
    layered in later PRs.
    
    ## Why
    
    Goal mode needs durable thread-level state before clients or model tools
    can safely build on it. The state layer needs to know whether a goal
    exists, what objective it tracks, whether it is active, paused,
    budget-limited, or complete, and how much time/token usage has already
    been accounted.
    
    ## What changed
    
    - Added the `goals` feature flag and generated config schema entry.
    - Added the `thread_goals` state table and Rust model for persisted
    thread goals.
    - Added state runtime APIs for creating, replacing, updating, deleting,
    and accounting goal usage.
    - Added `goal_id`-based stale update protection so an old goal update
    cannot overwrite a replacement.
    - Kept this PR scoped to persistence and state runtime behavior, with no
    app-server, model-facing, continuation, or TUI behavior yet.
    
    ## Verification
    
    - Added state runtime coverage for goal creation, replacement, stale
    update protection, status transitions, token-budget behavior, and usage
    accounting.
  • Refactor log DB into LogWriter interface (#19234)
    ## Why
    
    This prepares feedback log capture for a future remote app-server hook
    sink without changing the current local SQLite upload path. The
    important boundary is now intentionally small: a log sink is a tracing
    `Layer` that can also flush entries it has accepted.
    
    That keeps the existing SQLite implementation simple while giving the
    upcoming gRPC sink a place to fit beside it. SQLite and gRPC have
    different worker/write semantics, so this PR avoids introducing a shared
    buffered-sink abstraction and instead lets each `LogWriter` own the
    buffering mechanics it needs.
    
    ## What Changed
    
    - Added `LogSinkQueueConfig` with the existing local defaults: queue
    capacity `512`, batch size `128`, and flush interval `2s`.
    - Added `LogDbLayer::start_with_config(...)` while preserving
    `LogDbLayer::start(...)` and `log_db::start(...)` defaults.
    - Introduced the `LogWriter` trait as the minimal shared interface:
    `tracing_subscriber::Layer` plus `flush()`.
    - Made `LogDbLayer` implement `LogWriter`.
    - Kept tracing event formatting inside `LogDbLayer`; it still creates
    one `LogEntry` per tracing event before queueing it for SQLite.
    - Kept normal event capture best-effort and non-blocking via bounded
    `try_send`.
    
    ## Behavior Notes
    
    This does not change the SQLite schema, retention behavior,
    `/feedback/upload`, or Sentry upload behavior. Normal log events still
    drop when the queue is full; explicit `flush()` still waits for queue
    capacity and receiver processing before returning.
    
    ## Verification
    
    - `cargo test -p codex-state log_db`
    - `cargo test -p codex-state`
    - `just fix -p codex-state`
    
    The added tests cover configured batch-size flushing, configured
    interval flushing, queue-full drops, and the flush barrier semantics.
  • app-server: persist device key bindings in sqlite (#19206)
    ## Why
    
    Device-key providers should only own platform key material. The
    account/client binding used to authorize a signing payload is app-server
    state, and keeping that state in provider-specific metadata makes the
    same check harder to audit and harder to share across platform
    implementations.
    
    Persisting the binding in the shared state database gives the device-key
    crate a platform-neutral source of truth before it asks a provider to
    sign. It also lets app-server move potentially blocking key operations
    off the main message processor path, which matters once providers may
    wait for OS authentication prompts.
    
    ## What changed
    
    - Add a `device_key_bindings` state migration plus `StateRuntime`
    helpers keyed by `key_id`.
    - Add an async `DeviceKeyBindingStore` abstraction to `codex-device-key`
    and use it from `DeviceKeyStore::create` and `DeviceKeyStore::sign`.
    - Keep provider calls behind async store methods and run the synchronous
    provider work through `spawn_blocking`.
    - Wire app-server device-key RPC handling to the SQLite-backed binding
    store and spawn response/error delivery tasks for device-key requests.
    - Run the turn-start tracing test on the existing larger current-thread
    test harness after the larger async surface made the default test stack
    too small locally.
    
    ## Validation
    
    - `cargo test -p codex-device-key`
    - `cargo test -p codex-state device_key`
    - `cargo test -p codex-state`
    - `cargo test -p codex-app-server device_key`
    - `cargo test -p codex-app-server
    message_processor::tracing_tests::turn_start_jsonrpc_span_parents_core_turn_spans`
    - `cargo test -p codex-app-server`
    - `just fix -p codex-device-key`
    - `just fix -p codex-state`
    - `just fix -p codex-app-server`
    - `just bazel-lock-update`
    - `just bazel-lock-check`
    - `git diff --check`
  • rollout: persist turn permission profiles (#18281)
    ## Why
    
    Resume and reconstruction need to preserve the permissions that were
    active for each user turn. If rollouts only keep legacy sandbox fields,
    replay cannot faithfully represent profile-shaped overrides introduced
    earlier in the stack.
    
    ## What changed
    
    This records `permission_profile` on user-turn rollout events,
    reconstructs it through history/state extraction, and updates rollout
    reconstruction and related fixtures to keep the field explicit.
    
    ## Verification
    
    - `cargo test -p codex-core --test all permissions_messages --
    --nocapture`
    - `cargo test -p codex-core --test all request_permissions --
    --nocapture`
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    ---
    [//]: # (BEGIN SAPLING FOOTER)
    Stack created with [Sapling](https://sapling-scm.com). Best reviewed
    with [ReviewStack](https://reviewstack.dev/openai/codex/pull/18281).
    * #18288
    * #18287
    * #18286
    * #18285
    * #18284
    * #18283
    * #18282
    * __->__ #18281
  • Support multiple cwd filters for thread list (#18502)
    ## Summary
    
    - Teach app-server `thread/list` to accept either a single `cwd` or an
    array of cwd filters, returning threads whose recorded session cwd
    matches any requested path
    - Add `useStateDbOnly` as an explicit opt-in fast path for callers that
    want to answer `thread/list` from SQLite without scanning JSONL rollout
    files
    - Preserve backwards compatibility: by default, `thread/list` still
    scans JSONL rollouts and repairs SQLite state
    - Wire the new cwd array and SQLite-only options through app-server,
    local/remote thread-store, rollout listing, generated TypeScript/schema
    fixtures, proto output, and docs
    
    ## Test Plan
    
    - `cargo test -p codex-app-server-protocol`
    - `cargo test -p codex-rollout`
    - `cargo test -p codex-thread-store`
    - `cargo test -p codex-app-server thread_list`
    - `just fmt`
    - `just fix -p codex-app-server-protocol -p codex-rollout -p
    codex-thread-store -p codex-app-server`
    - `cargo build -p codex-cli --bin codex`
  • fix: fully revert agent identity runtime wiring (#18757)
    ## Summary
    
    This PR fully reverts the previously merged Agent Identity runtime
    integration from the old stack:
    https://github.com/openai/codex/pull/17387/changes
    
    It removes the Codex-side task lifecycle wiring, rollout/session
    persistence, feature flag plumbing, lazy `auth.json` mutation,
    background task auth paths, and request callsite changes introduced by
    that stack.
    
    This leaves the repo in a clean pre-AgentIdentity integration state so
    the follow-up PRs can reintroduce the pieces in smaller reviewable
    layers.
    
    ## Stack
    
    1. This PR: full revert
    2. https://github.com/openai/codex/pull/18871: move Agent Identity
    business logic into a crate
    3. https://github.com/openai/codex/pull/18785: add explicit
    AgentIdentity auth mode and startup task allocation
    4. https://github.com/openai/codex/pull/18811: migrate auth callsites
    through AuthProvider
    
    ## Testing
    
    Tests: targeted Rust checks, cargo-shear, Bazel lock check, and CI.
  • [tool search] support namespaced deferred dynamic tools (#18413)
    Deferred dynamic tools need to round-trip a namespace so a tool returned
    by `tool_search` can be called through the same registry key that core
    uses for dispatch.
    
    This change adds namespace support for dynamic tool specs/calls,
    persists it through app-server thread state, and routes dynamic tool
    calls by full `ToolName` while still sending the app the leaf tool name.
    Deferred dynamic tools must provide a namespace; non-deferred dynamic
    tools may remain top-level.
    
    It also introduces `LoadableToolSpec` as the shared
    function-or-namespace Responses shape used by both `tool_search` output
    and dynamic tool registration, so dynamic tools use the same wrapping
    logic in both paths.
    
    Validation:
    - `cargo test -p codex-tools`
    - `cargo test -p codex-core tool_search`
    
    ---------
    
    Co-authored-by: Sayan Sisodiya <sayan@openai.com>
  • feat: cascade thread archive (#18112)
    Cascade the thread archive endpoint to all the sub-agents in the agent
    tree
    
    Fix: https://github.com/openai/codex/issues/17867
    
    ---------
    
    Co-authored-by: Codex <noreply@openai.com>
  • feat: log client use min log level (#18661)
    In the log client, use the log level filter as a minimum severity
    instead of exact match
    
    ---------
    
    Co-authored-by: Codex <noreply@openai.com>
  • Persist and prewarm agent tasks per thread (#17978)
    ## Summary
    - persist registered agent tasks in the session state update stream so
    the thread can reuse them
    - prewarm task registration once identity registration succeeds, while
    keeping startup failures best-effort
    - isolate the session-side task lifecycle into a dedicated module so
    AgentIdentityManager and RegisteredAgentTask do not leak across as many
    core layers
    
    ## Testing
    - cargo test -p codex-core startup_agent_task_prewarm
    - cargo test -p codex-core
    cached_agent_task_for_current_identity_clears_stale_task
    - cargo test -p codex-core record_initial_history_
  • Add sorting/backwardsCursor to thread/list and new thread/turns/list api (#17305)
    To improve performance of UI loads from the app, add two main
    improvements:
    1. The `thread/list` api now gets a `sortDirection` request field and a
    `backwardsCursor` to the response, which lets you paginate forwards and
    backwards from a window. This lets you fetch the first few items to
    display immediately while you paginate to fill in history, then can
    paginate "backwards" on future loads to catch up with any changes since
    the last UI load without a full reload of the entire data set.
    2. Added a new `thread/turns/list` api which also has sortDirection and
    backwardsCursor for the same behavior as `thread/list`, allowing you the
    same small-fetch for immediate display followed by background fill-in
    and resync catchup.
  • feat(permissions): add glob deny-read policy support (#15979)
    ## Summary
    - adds first-class filesystem policy entries for deny-read glob patterns
    - parses config such as :project_roots { "**/*.env" = "none" } into
    pattern entries
    - enforces deny-read patterns in direct read/list helpers
    - fails closed for sandbox execution until platform backends enforce
    glob patterns in #18096
    - preserves split filesystem policy in turn context only when it cannot
    be reconstructed from legacy sandbox policy
    
    ## Stack
    1. This PR - glob deny-read policy/config/direct-tool support
    2. #18096 - macOS and Linux sandbox enforcement
    3. #17740 - managed deny-read requirements
    
    ## Verification
    - just fmt
    - cargo check -p codex-core -p codex-sandboxing --tests
    
    ---------
    
    Co-authored-by: Codex <noreply@openai.com>
  • fix: windows flake (#18127)
    Fix `sqlite_feedback_logs_match_feedback_formatter_shape` by explicitly
    flushing the async log DB layer before querying SQLite.
  • Moving updated-at timestamps to unique millisecond times (#17489)
    To allow the ability to have guaranteed-unique cursors, we make two
    important updates:
    * Add new updated_at_ms and created_at_ms columns that are in
    millisecond precision
    * Guarantee uniqueness -- if multiple items are inserted at the same
    millisecond, bump the new one by one millisecond until it becomes unique
    
    This lets us use single-number cursors for forwards and backwards paging
    through resultsets and guarantee that the cursor is a fixed point to do
    (timestamp > cursor) and get new items only.
    
    This updated implementation is backwards-compatible since multiple
    appservers can be running and won't handle the previous method well.
  • Forward app-server turn clientMetadata to Responses (#16009)
    ## Summary
    App-server v2 already receives turn-scoped `clientMetadata`, but the
    Rust app-server was dropping it before the outbound Responses request.
    This change keeps the fix lightweight by threading that metadata through
    the existing turn-metadata path rather than inventing a new transport.
    
    ## What we're trying to do and why
    We want turn-scoped metadata from the app-server protocol layer,
    especially fields like Hermes/GAAS run IDs, to survive all the way to
    the actual Responses API request so it is visible in downstream
    websocket request logging and analytics.
    
    The specific bug was:
    - app-server protocol uses camelCase `clientMetadata`
    - Responses transport already has an existing turn metadata carrier:
    `x-codex-turn-metadata`
    - websocket transport already rewrites that header into
    `request.request_body.client_metadata["x-codex-turn-metadata"]`
    - but the Rust app-server never parsed or stored `clientMetadata`, so
    nothing from the app-server request was making it into that existing
    path
    
    This PR fixes that without adding a new header or a second metadata
    channel.
    
    ## How we did it
    ### Protocol surface
    - Add optional `clientMetadata` to v2 `TurnStartParams` and
    `TurnSteerParams`
    - Regenerate the JSON schema / TypeScript fixtures
    - Update app-server docs to describe the field and its behavior
    
    ### Runtime plumbing
    - Add a dedicated core op for app-server user input carrying turn-scoped
    metadata: `Op::UserInputWithClientMetadata`
    - Wire `turn/start` and `turn/steer` through that op / signature path
    instead of dropping the metadata at the message-processor boundary
    - Store the metadata in `TurnMetadataState`
    
    ### Transport behavior
    - Reuse the existing serialized `x-codex-turn-metadata` payload
    - Merge the new app-server `clientMetadata` into that JSON additively
    - Do **not** replace built-in reserved fields already present in the
    turn metadata payload
    - Keep websocket behavior unchanged at the outer shape level: it still
    sends only `client_metadata["x-codex-turn-metadata"]`, but that JSON
    string now contains the merged fields
    - Keep HTTP fallback behavior unchanged except that the existing
    `x-codex-turn-metadata` header now includes the merged fields too
    
    ### Request shape before / after
    Before, a websocket `response.create` looked like:
    ```json
    {
      "type": "response.create",
      "client_metadata": {
        "x-codex-turn-metadata": "{\"session_id\":\"...\",\"turn_id\":\"...\"}"
      }
    }
    ```
    Even if the app-server caller supplied `clientMetadata`, it was not
    represented there.
    
    After, the same request shape is preserved, but the serialized payload
    now includes the new turn-scoped fields:
    ```json
    {
      "type": "response.create",
      "client_metadata": {
        "x-codex-turn-metadata": "{\"session_id\":\"...\",\"turn_id\":\"...\",\"fiber_run_id\":\"fiber-start-123\",\"origin\":\"gaas\"}"
      }
    }
    ```
    
    ## Validation
    ### Targeted tests added / updated
    - protocol round-trip coverage for `clientMetadata` on `turn/start` and
    `turn/steer`
    - protocol round-trip coverage for `Op::UserInputWithClientMetadata`
    - `TurnMetadataState` merge test proving client metadata is added
    without overwriting reserved built-in fields
    - websocket request-shape test proving outbound `response.create`
    contains merged metadata inside
    `client_metadata["x-codex-turn-metadata"]`
    - app-server integration tests proving:
    - `turn/start` forwards `clientMetadata` into the outbound Responses
    request path
      - websocket warmup + real turn request both behave correctly
      - `turn/steer` updates the follow-up request metadata
    
    ### Commands run
    - `just write-app-server-schema`
    - `cargo test -p codex-app-server-protocol`
    - `cargo test -p codex-protocol`
    - `cargo test -p codex-core
    turn_metadata_state_merges_client_metadata_without_replacing_reserved_fields
    --lib`
    - `cargo test -p codex-core --test all
    responses_websocket_preserves_custom_turn_metadata_fields`
    - `cargo test -p codex-app-server --test all client_metadata`
    - `cargo test -p codex-app-server --test all
    turn_start_forwards_client_metadata_to_responses_websocket_request_body_v2
    -- --nocapture`
    - `just fmt`
    - `just fix -p codex-core -p codex-protocol -p codex-app-server-protocol
    -p codex-app-server`
    - `just fix -p codex-exec -p codex-tui-app-server`
    - `just argument-comment-lint`
    
    ### Full suite note
    `cargo test` in `codex-rs` still fails in:
    -
    `suite::v2::turn_interrupt::turn_interrupt_resolves_pending_command_approval_request`
    
    I verified that same failure on a clean detached `HEAD` worktree with an
    isolated `CARGO_TARGET_DIR`, so it is not caused by this patch.
  • chore: merge name and title (#17116)
    Merge title and name concept to leverage the sqlite title column and
    have more efficient queries
    
    ---------
    
    Co-authored-by: Codex <noreply@openai.com>
  • Preserve null developer instructions (#16976)
    Preserve explicit null developer-instruction overrides across app-server
    resume and fork flows.
  • fix(sqlite): don't hard fail migrator if DB is newer (#16924)
    ## Description
    
    This PR makes the SQLite state runtime tolerate databases that have
    already been migrated by a newer Codex binary.
    
    Today, if an older CLI sees migration versions in `_sqlx_migrations`
    that it doesn't know about, startup fails. This change relaxes that
    check for the runtime migrators we use in `codex-state` so older
    binaries can keep opening the DB in that case.
    
    ## Why
    
    We can end up with mixed-version CLIs running against the same local
    state DB. In that setup, treating "the database is ahead of me" as a
    hard error is unnecessarily strict and breaks the older client even when
    the migration history is otherwise fine.
    
    ## Follow-up
    
    We still clean up versioned `state_*.sqlite` and `logs_*.sqlite` files
    during init, so older binaries can treat newer DB files as legacy. That
    should probably be tightened separately if we want mixed-version local
    usage to be fully safe.
  • fix: remove unused import (#16449)
    https://github.com/openai/codex/pull/16433 resulted in an unused import
    inside `mod tests`. This is flagged by `cargo clippy --tests`, which is
    run as part of
    https://github.com/openai/codex/actions/workflows/rust-ci-full.yml, but
    is not caught by our current Bazel setup for clippy.
    
    Fixing this ASAP to get
    https://github.com/openai/codex/actions/workflows/rust-ci-full.yml green
    again, but am looking at fixing the Bazel workflow in parallel.
  • feat: auto vaccum state DB (#16434)
    Start with a full vaccum the first time, then auto-vaccum incremental
  • chore: drop log DB (#16433)
    Drop the log table from the state DB
  • feat: log db better maintenance (#16330)
    Run a DB clean-up more frequently with an incremental `VACCUM` in it
  • chore: clean up argument-comment lint and roll out all-target CI on macOS (#16054)
    ## Why
    
    `argument-comment-lint` was green in CI even though the repo still had
    many uncommented literal arguments. The main gap was target coverage:
    the repo wrapper did not force Cargo to inspect test-only call sites, so
    examples like the `latest_session_lookup_params(true, ...)` tests in
    `codex-rs/tui_app_server/src/lib.rs` never entered the blocking CI path.
    
    This change cleans up the existing backlog, makes the default repo lint
    path cover all Cargo targets, and starts rolling that stricter CI
    enforcement out on the platform where it is currently validated.
    
    ## What changed
    
    - mechanically fixed existing `argument-comment-lint` violations across
    the `codex-rs` workspace, including tests, examples, and benches
    - updated `tools/argument-comment-lint/run-prebuilt-linter.sh` and
    `tools/argument-comment-lint/run.sh` so non-`--fix` runs default to
    `--all-targets` unless the caller explicitly narrows the target set
    - fixed both wrappers so forwarded cargo arguments after `--` are
    preserved with a single separator
    - documented the new default behavior in
    `tools/argument-comment-lint/README.md`
    - updated `rust-ci` so the macOS lint lane keeps the plain wrapper
    invocation and therefore enforces `--all-targets`, while Linux and
    Windows temporarily pass `-- --lib --bins`
    
    That temporary CI split keeps the stricter all-targets check where it is
    already cleaned up, while leaving room to finish the remaining Linux-
    and Windows-specific target-gated cleanup before enabling
    `--all-targets` on those runners. The Linux and Windows failures on the
    intermediate revision were caused by the wrapper forwarding bug, not by
    additional lint findings in those lanes.
    
    ## Validation
    
    - `bash -n tools/argument-comment-lint/run.sh`
    - `bash -n tools/argument-comment-lint/run-prebuilt-linter.sh`
    - shell-level wrapper forwarding check for `-- --lib --bins`
    - shell-level wrapper forwarding check for `-- --tests`
    - `just argument-comment-lint`
    - `cargo test` in `tools/argument-comment-lint`
    - `cargo test -p codex-terminal-detection`
    
    ## Follow-up
    
    - Clean up remaining Linux-only target-gated callsites, then switch the
    Linux lint lane back to the plain wrapper invocation.
    - Clean up remaining Windows-only target-gated callsites, then switch
    the Windows lint lane back to the plain wrapper invocation.
  • feat: add multi-thread log query (#15776)
    Required for multi-agent v2
  • Move git utilities into a dedicated crate (#15564)
    - create `codex-git-utils` and move the shared git helpers into it with
    file moves preserved for diff readability
    - move the `GitInfo` helpers out of `core` so stacked rollout work can
    depend on the shared crate without carrying its own git info module
    
    ---------
    
    Co-authored-by: Ahmed Ibrahim <219906144+aibrahim-oai@users.noreply.github.com>
    Co-authored-by: Codex <noreply@openai.com>
  • feat: change multi-agent to use path-like system instead of uuids (#15313)
    This PR add an URI-based system to reference agents within a tree. This
    comes from a sync between research and engineering.
    
    The main agent (the one manually spawned by a user) is always called
    `/root`. Any sub-agent spawned by it will be `/root/agent_1` for example
    where `agent_1` is chosen by the model.
    
    Any agent can contact any agents using the path.
    
    Paths can be used either in absolute or relative to the calling agents
    
    Resume is not supported for now on this new path
  • feat: add graph representation of agent network (#15056)
    Add a representation of the agent graph. This is now used for:
    * Cascade close agents (when I close a parent, it close the kids)
    * Cascade resume (oposite)
    
    Later, this will also be used for post-compaction stuffing of the
    context
    
    Direct fix for: https://github.com/openai/codex/issues/14458
  • Align SQLite feedback logs with feedback formatter (#13494)
    ## Summary
    - store a pre-rendered `feedback_log_body` in SQLite so `/feedback`
    exports keep span prefixes and structured event fields
    - render SQLite feedback exports with timestamps and level prefixes to
    match the old in-memory feedback formatter, while preserving existing
    trailing newlines
    - count `feedback_log_body` in the SQLite retention budget so structured
    or span-prefixed rows still prune correctly
    - bound `/feedback` row loading in SQL with the retention estimate, then
    apply exact whole-line truncation in Rust so uploads stay capped without
    splitting lines
    
    ## Details
    - add a `feedback_log_body` column to `logs` and backfill it from
    `message` for existing rows
    - capture span names plus formatted span and event fields at write time,
    since SQLite does not retain enough structure to reconstruct the old
    formatter later
    - keep SQLite feedback queries scoped to the requested thread plus
    same-process threadless rows
    - restore a SQL-side cumulative `estimated_bytes` cap for feedback
    export queries so over-retained partitions do not load every matching
    row before truncation
    - add focused formatting coverage for exported feedback lines and parity
    coverage against `tracing_subscriber`
    
    ## Testing
    - cargo test -p codex-state
    - just fix -p codex-state
    - just fmt
    
    codex author: `codex resume 019ca1b0-0ecc-78b1-85eb-6befdd7e4f1f`
    
    ---------
    
    Co-authored-by: Codex <noreply@openai.com>
  • Feat: CXA-1831 Persist latest model and reasoning effort in sqlite (#14859)
    ### Summary
    The goal is for us to get the latest turn model and reasoning effort on
    thread/resume is no override is provided on the thread/resume func call.
    This is the part 1 which we write the model and reasoning effort for a
    thread to the sqlite db and there will be a followup PR to consume the
    two new fields on thread/resume.
    
    [part 2 PR is currently WIP](https://github.com/openai/codex/pull/14888)
    and this one can be merged independently.
  • Fix agent jobs finalization race and reduce status polling churn (#14843)
    ## Summary
    - make `report_agent_job_result` atomically transition an item from
    running to completed while storing `result_json`
    - remove brittle finalization grace-sleep logic and make finished-item
    cleanup idempotent
    - replace blind fixed-interval waiting with status-subscription-based
    waiting for active worker threads
    - add state runtime tests for atomic completion and late-report
    rejection
    
    ## Why
    This addresses the race and polling concerns in #13948 by removing
    timing-based correctness assumptions and reducing unnecessary status
    polling churn.
    
    ## Validation
    - `cd codex-rs && just fmt`
    - `cd codex-rs && cargo test -p codex-state`
    - `cd codex-rs && cargo test -p codex-core --test all suite::agent_jobs`
    - `cd codex-rs && cargo test`
    - fails in an unrelated app-server tracing test:
    `message_processor::tracing_tests::thread_start_jsonrpc_span_exports_server_span_and_parents_children`
    timed out waiting for response
    
    ## Notes
    - This PR supersedes #14129 with the same agent-jobs fix on a clean
    branch from `main`.
    - The earlier PR branch was stacked on unrelated history, which made the
    review diff include unrelated commits.
    
    Fixes #13948
  • Apply argument comment lint across codex-rs (#14652)
    ## Why
    
    Once the repo-local lint exists, `codex-rs` needs to follow the
    checked-in convention and CI needs to keep it from drifting. This commit
    applies the fallback `/*param*/` style consistently across existing
    positional literal call sites without changing those APIs.
    
    The longer-term preference is still to avoid APIs that require comments
    by choosing clearer parameter types and call shapes. This PR is
    intentionally the mechanical follow-through for the places where the
    existing signatures stay in place.
    
    After rebasing onto newer `main`, the rollout also had to cover newly
    introduced `tui_app_server` call sites. That made it clear the first cut
    of the CI job was too expensive for the common path: it was spending
    almost as much time installing `cargo-dylint` and re-testing the lint
    crate as a representative test job spends running product tests. The CI
    update keeps the full workspace enforcement but trims that extra
    overhead from ordinary `codex-rs` PRs.
    
    ## What changed
    
    - keep a dedicated `argument_comment_lint` job in `rust-ci`
    - mechanically annotate remaining opaque positional literals across
    `codex-rs` with exact `/*param*/` comments, including the rebased
    `tui_app_server` call sites that now fall under the lint
    - keep the checked-in style aligned with the lint policy by using
    `/*param*/` and leaving string and char literals uncommented
    - cache `cargo-dylint`, `dylint-link`, and the relevant Cargo
    registry/git metadata in the lint job
    - split changed-path detection so the lint crate's own `cargo test` step
    runs only when `tools/argument-comment-lint/*` or `rust-ci.yml` changes
    - continue to run the repo wrapper over the `codex-rs` workspace, so
    product-code enforcement is unchanged
    
    Most of the code changes in this commit are intentionally mechanical
    comment rewrites or insertions driven by the lint itself.
    
    ## Verification
    
    - `./tools/argument-comment-lint/run.sh --workspace`
    - `cargo test -p codex-tui-app-server -p codex-tui`
    - parsed `.github/workflows/rust-ci.yml` locally with PyYAML
    
    ---
    
    * -> #14652
    * #14651
  • dynamic tool calls: add param exposeToContext to optionally hide tool (#14501)
    This extends dynamic_tool_calls to allow us to hide a tool from the
    model context but still use it as part of the general tool calling
    runtime (for ex from js_repl/code_mode)
  • chore(otel): rename OtelManager to SessionTelemetry (#13808)
    ## Summary
    This is a purely mechanical refactor of `OtelManager` ->
    `SessionTelemetry` to better convey what the struct is doing. No
    behavior change.
    
    ## Why
    
    `OtelManager` ended up sounding much broader than what this type
    actually does. It doesn't manage OTEL globally; it's the session-scoped
    telemetry surface for emitting log/trace events and recording metrics
    with consistent session metadata (`app_version`, `model`, `slug`,
    `originator`, etc.).
    
    `SessionTelemetry` is a more accurate name, and updating the call sites
    makes that boundary a lot easier to follow.
    
    ## Validation
    
    - `just fmt`
    - `cargo test -p codex-otel`
    - `cargo test -p codex-core`