## Why
Selected capability roots belong to the executor filesystem, not the
app-server host. Converting their path strings into the host's native
`Path` breaks whenever the two machines use different path conventions,
such as a Windows executor behind a Unix app-server.
This PR establishes `PathUri` as the selected-plugin boundary so the
executor remains authoritative for its paths.
## What changed
- Require `selectedCapabilityRoots[].location.path` to be a canonical
`file:` URI and deserialize it directly as `PathUri`; native path
strings are rejected.
- Update the app-server schema, generated TypeScript, examples, and
request coverage for the URI contract.
- Keep selected roots, resolved plugin locations, manifest paths, and
manifest resources as `PathUri`.
- Inspect and read plugin roots and manifests only through the selected
environment's `ExecutorFileSystem`.
- Parse executor manifests with the shared URI-native parser from #29620
instead of projecting them onto the host filesystem.
- Enforce resource containment lexically and preserve the root URI's
POSIX or Windows path convention.
- Cover foreign Windows plugin roots and URI-native manifest resources.
```text
thread/start
selectedCapabilityRoots[].location.path = "file:///C:/plugins/demo"
| PathUri
v
ExecutorFileSystem
|
+--> plugin.json
+--> manifest resources
```
This PR stops at the shared selected-plugin representation. The next two
PRs remove the remaining host-path projections in the skill and MCP
consumers.
## Stack
1. #29614 — add lexical `PathUri` containment.
2. #29620 — share URI-native manifest path resolution.
3. **This PR** — keep selected plugin roots and resources URI-native.
4. #29626 — load executor skills without host path conversion.
5. #29628 — resolve executor MCP working directories without host path
conversion.
## Why
#27870 teaches the MCP extension how to discover stdio MCP servers
declared by a selected executor plugin, but app-server does not yet
install that contributor or initialize its per-thread state. As a
result, `thread/start.selectedCapabilityRoots` can select the plugin
while its MCP servers remain inactive.
This PR closes that app-server wiring gap:
```text
thread/start(selectedCapabilityRoots)
-> initialize the thread's selected-plugin MCP snapshot
-> read the selected plugin's .mcp.json through its environment
-> start declared stdio servers in that environment
-> expose their tools only on the selected thread
```
## What changed
- Install the selected-executor-plugin MCP contributor in app-server
using the existing shared `EnvironmentManager`.
- Initialize its frozen thread snapshot when `thread/start` includes
selected capability roots.
- Document that selected plugin stdio MCPs are activated in their owning
environment.
- Add an app-server E2E covering the complete selection-to-tool-call
path.
The E2E verifies that:
- the selected MCP process receives an executor-only environment value,
proving the tool runs through the selected environment;
- the MCP tool is advertised to the model and can be called;
- a normal MCP config reload does not discard the thread's frozen
selected-plugin registration;
- another thread without the selected root does not see the MCP server.
## Scope
- Existing sessions without `selectedCapabilityRoots` are unchanged.
- Only stdio MCP declarations are activated. HTTP declarations remain
inactive.
- This does not change selected-root persistence across resume/fork or
add hosted-plugin behavior.
## Verification
- Focused app-server E2E:
`selected_executor_plugin_exposes_its_stdio_mcp_only_to_that_thread`
## Stack
Stacked on #27870.
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