## Summary
- Remove `perCwdExtraUserRoots` / `SkillsListExtraRootsForCwd` from the
`skills/list` app-server API.
- Drop Rust app-server and `codex-core-skills` extra-root plumbing so
skill scans are keyed by the normal cwd/user/plugin roots only.
- Regenerate app-server schemas and update docs/tests that only existed
for the removed extra-roots behavior.
## Validation
- `just write-app-server-schema`
- `just fmt`
- `cargo test -p codex-app-server-protocol`
- `cargo test -p codex-core-skills`
- `just fix -p codex-app-server-protocol`
- `just fix -p codex-core-skills`
- `just fix -p codex-app-server`
- `just fix -p codex-tui`
## Notes
- `cargo test -p codex-app-server --test all skills_list` ran the edited
skills-list cases, but the full filtered run ended on existing
`skills_changed_notification_is_emitted_after_skill_change` timeout
after a websocket `401`.
- `cargo test -p codex-tui --lib` compiled the changed TUI callers, then
failed two unrelated status permission tests because local
`/etc/codex/requirements.toml` forbids `DangerFullAccess`.
- Source-truth check found the OpenAI monorepo still has
generated/app-server-kit mirror references to the removed field; those
should be cleaned up when generated app-server types are synced or in a
companion OpenAI cleanup.
## Summary
- move skill loading and management into codex-core-skills
- leave codex-core with the thin integration layer and shared wiring
## Testing
- CI
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Co-authored-by: Codex <noreply@openai.com>
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