50 Commits

  • Preserve namespaces on custom tool calls (#30302)
    ## Summary
    
    - Preserve the optional namespace on custom tool calls during response
    deserialization and app-server replay.
    - Use the namespaced tool identifier for streaming argument handling and
    tool dispatch.
    - Regenerate app-server protocol schemas.
    - Add regression tests covering namespace serialization and routing.
    
    ## Testing
    
    - Ran affected protocol and app-server test suites.
    - Ran the full core test suite; two load-sensitive timing tests passed
    when rerun individually.
    - Ran Clippy and formatting checks.
    - Verified with a local end-to-end app-server replay that the namespace
    is preserved through the complete request/response flow.
  • [codex] Use expect in integration tests (#28441)
    The workspace denies `clippy::expect_used` in production. Although
    `clippy.toml` allows `expect` in tests, Bazel Clippy compiles
    integration-test helper code in a way that does not receive that
    exemption, which encouraged verbose `unwrap_or_else(... panic!(...))`
    and equivalent `match`/`let else` forms.
    
    This allows `clippy::expect_used` once at each integration-test crate
    root (including aggregated suites and test-support libraries), then
    replaces manual panic-based Result and Option unwraps with
    `expect`/`expect_err`. Standalone `tests/*.rs` files remain their own
    crate roots. Intentional assertion and unexpected-variant panics remain
    unchanged, and the production `expect_used = "deny"` lint remains in
    place.
    
    The cleanup is mechanical and net-negative in line count.
  • Pair thread environment settings (#26687)
    ## Why
    
    Thread cwd and environment selections are a single logical setting in
    core: updating one without the other can silently desynchronize the
    next-turn execution context. This change makes that relationship
    explicit in the internal thread settings flow while preserving the
    existing app-server public API shape.
    
    ## What changed
    
    - Moved the cwd/environment pair through internal
    `ThreadSettingsOverrides.environment_settings` instead of a top-level
    internal `cwd` field.
    - Kept `thread/settings/update` public params unchanged, with app-server
    translating top-level `cwd` into the paired internal settings shape.
    - Moved `Op::UserInput` environment overrides into thread settings so
    user turns and settings updates use the same core path.
    - Updated core, app-server, MCP, memories, sample, and test callsites to
    construct the paired settings shape.
    
    ## Verification
    
    - `git diff --check`
    - Local test run starting after PR creation.
  • Make deny canonical for filesystem permission entries (#23493)
    ## Why
    Filesystem permission profiles used `none` for deny-read entries, which
    is less direct than the action the entry actually represents. This
    change makes `deny` the canonical filesystem permission spelling while
    preserving compatibility for older configs that still send `none`.
    
    ## What changed
    - rename `FileSystemAccessMode::None` to `Deny`
    - serialize and generate schemas with `deny` as the canonical value
    - retain `none` only as a legacy input alias for temporary config
    compatibility
    - update filesystem glob diagnostics and regression coverage to use the
    canonical spelling
    - refresh config and app-server schema fixtures to match the new wire
    shape
    
    ## Validation
    - `cargo test -p codex-protocol`
    - `cargo test -p codex-app-server-protocol`
    - `cargo test -p codex-core config_toml_deserializes_permission_profiles
    --lib`
    - `cargo test -p codex-core
    read_write_glob_patterns_still_reject_non_subpath_globs --lib`
    
    Earlier in the session, a broad `cargo test -p codex-core` run reached
    unrelated pre-existing failures in timing/snapshot/git-info tests under
    this environment; the targeted surfaces touched by this PR passed
    cleanly.
  • chore(features) rm Feature::ApplyPatchFreeform (#22711)
    ## Summary
    Removes the feature since this is effectively on by default in all cases
    where we should use it, or can be configured via models.json.
    
    ## Testing
    - [x] unit tests pass
  • [codex] Remove unused legacy shell tools (#22246)
    ## Why
    
    Recent session history showed no active use of the raw `shell`,
    `local_shell`, or `container.exec` execution surfaces. Keeping those
    handlers/specs wired into core leaves duplicate shell execution paths
    alongside the supported `shell_command` and unified exec tools.
    
    ## What changed
    
    - Removed the raw `shell` handler/spec and its `ShellToolCallParams`
    protocol helper.
    - Removed the legacy `local_shell` and `container.exec` handler/spec
    plumbing while preserving persisted-history compatibility for old
    response items.
    - Normalized model/config `default` and `local` shell selections to
    `shell_command`.
    - Pruned tests that exercised removed raw-shell/local-shell/apply-patch
    variants and kept coverage on `shell_command`, unified exec, and
    freeform `apply_patch`.
    
    ## Verification
    
    - `git diff --check`
    - `cargo test -p codex-protocol`
    - `cargo test -p codex-tools`
    - `cargo test -p codex-core tools::handlers::shell`
    - `cargo test -p codex-core tools::spec`
    - `cargo test -p codex-core tools::router`
    - `cargo test -p codex-core
    active_call_preserves_triggering_command_context`
    - `cargo test -p codex-core guardian_tests`
    - `cargo test -p codex-core --test all shell_serialization`
    - `cargo test -p codex-core --test all apply_patch_cli`
    - `cargo test -p codex-core --test all shell_command_`
    - `cargo test -p codex-core --test all local_shell`
    - `cargo test -p codex-core --test all otel::`
    - `cargo test -p codex-core --test all hooks::`
    - `just fix -p codex-core`
    - `just fix -p codex-tools`
  • Remove unavailable MCP placeholder tool backfill (#22439)
    ## Why
    
    `UnavailableDummyTools` kept synthetic placeholder tools alive for
    historical tool calls whose backing MCP tool was no longer available.
    That path adds stale model-visible tool specs and special routing at the
    point where unavailable MCP calls should use ordinary current-tool
    handling. This removes the runtime backfill instead of preserving a
    second compatibility lane.
    
    ## Is it safe to remove?
    
    The unavailable tools were added in #17853 after a CS issue when a
    previously-called MCP tool failed to load and was omitted from the CS
    spec. Now that we have tool search, I think this is resolved:
    - API merges tools from previous TST output into effective tool set so
    theyre always in CS spec
    - if an MCP tool surfaced by TST later becomes unavailable, the model
    can still call it and it will just return model-visible error
    - both TST output and function call output are dropped on compaction so
    model will not remember old calls to MCP post compaction
    
    ## What changed
    
    - Delete unavailable-tool collection, placeholder handler, router/spec
    plumbing, and obsolete placeholder coverage.
    - Keep `features.unavailable_dummy_tools` as a removed no-op feature
    tombstone so existing configs still parse cleanly.
    - Add an integration-style `tool_search` regression test showing that a
    deferred MCP tool surfaced through `tool_search` still routes through
    MCP and returns a model-visible tool-call error rather than `unsupported
    call`.
    
    ## Verification
    
    - `cargo test -p codex-core tool_search`
  • [codex] Delete function-style apply_patch (#21651)
    ## Why
    
    `apply_patch` is now a freeform/custom tool. Keeping the old
    JSON/function-style registration and parsing path left another way for
    models and tests to invoke `apply_patch`, which made the tool surface
    harder to reason about.
    
    ## What changed
    
    - Removed the `ApplyPatchToolType::Function` variant, JSON `apply_patch`
    spec, and handler support for function payloads.
    - Kept `apply_patch_tool_type = freeform` as the supported model
    metadata path, including Bedrock catalog metadata.
    - Migrated `apply_patch` tests and SSE fixtures to custom/freeform tool
    calls.
    
    ## Verification
    
    - `cargo test -p codex-tools -p codex-protocol -p codex-model-provider`
    - `cargo test -p codex-core tools::handlers::apply_patch --lib`
    - `cargo test -p codex-core --test all
    apply_patch_tool_executes_and_emits_patch_events`
    - `cargo test -p codex-core --test all
    apply_patch_reports_parse_diagnostics`
    - `cargo test -p codex-exec test_apply_patch_tool`
    - `just fix -p codex-core`
    - `just fix -p codex-tools -p codex-protocol -p codex-model-provider -p
    codex-exec`
  • [codex] Enable apply_patch freeform by default (#21687)
    ## Summary
    - enable `apply_patch_freeform` by default in the feature registry
    
    ## Why
    - make the freeform `apply_patch` tool available by default when model
    metadata does not explicitly opt into another mode
    
    ## Validation
    - `just fmt`
    - did not run tests
    
    ---------
    
    Co-authored-by: Codex <noreply@openai.com>
  • core tests: migrate tools tests to permission profiles (#20027)
    ## Summary
    
    This continues the test-side migration away from `SandboxPolicy` by
    removing the remaining legacy policy setup in
    `core/tests/suite/tools.rs`. The affected test was already modeling a
    profile-backed filesystem policy with a deny-read glob, so configuring
    the test through `Permissions::set_permission_profile()` is a better
    match for the behavior being exercised.
    
    ## Changes
    
    - Drops the `SandboxPolicy` import from `core/tests/suite/tools.rs`.
    - Configures the glob deny-read shell test directly with a
    `PermissionProfile` instead of creating a legacy read-only policy first.
    - Submits the test turn with the session permission profile so the
    deny-read glob remains active for the command under test.
    
    ## Verification
    
    - `cargo check -p codex-core --tests`
  • core tests: configure profiles directly (#20015)
    ## Summary
    - Replace legacy sandbox config setup in delegate and telemetry tests
    with direct `PermissionProfile` configuration.
    - Move no-sandbox and read-only test turns in `tools.rs`,
    `code_mode.rs`, `user_shell_cmd.rs`, and `model_visible_layout.rs` from
    legacy `SandboxPolicy` values to `PermissionProfile` helpers, while
    leaving the deny-glob read-only compatibility case for a later targeted
    cleanup.
    - Use `PermissionProfile::read_only()` where tests need managed
    read-only behavior and `PermissionProfile::Disabled` where they
    intentionally need no sandbox.
    - Reduce `SandboxPolicy` references in `codex-rs/core/tests` from 27
    files after #20013 to 22 files.
    
    ## Testing
    - `cargo check -p codex-core --tests`
    - `just fmt`
  • permissions: derive compatibility policies from profiles (#19392)
    ## Why
    
    After #19391, `PermissionProfile` and the split filesystem/network
    policies could still be stored in parallel. That creates drift risk: a
    profile can preserve deny globs, external enforcement, or split
    filesystem entries while a cached projection silently loses those
    details. This PR makes the profile the runtime source and derives
    compatibility views from it.
    
    ## What Changed
    
    - Removes stored filesystem/network sandbox projections from
    `Permissions` and `SessionConfiguration`; their accessors now derive
    from the canonical `PermissionProfile`.
    - Derives legacy `SandboxPolicy` snapshots from profiles only where an
    older API still needs that field.
    - Updates MCP connection and elicitation state to track
    `PermissionProfile` instead of `SandboxPolicy` for auto-approval
    decisions.
    - Adds semantic filesystem-policy comparison so cwd changes can preserve
    richer profiles while still recognizing equivalent legacy projections
    independent of entry ordering.
    - Updates config/session tests to assert profile-derived projections
    instead of parallel stored fields.
    
    ## Verification
    
    - `cargo test -p codex-core direct_write_roots`
    - `cargo test -p codex-core runtime_roots_to_legacy_projection`
    - `cargo test -p codex-app-server
    requested_permissions_trust_project_uses_permission_profile_intent`
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    ---
    [//]: # (BEGIN SAPLING FOOTER)
    Stack created with [Sapling](https://sapling-scm.com). Best reviewed
    with [ReviewStack](https://reviewstack.dev/openai/codex/pull/19392).
    * #19395
    * #19394
    * #19393
    * __->__ #19392
  • Add turn-scoped environment selections (#18416)
    ## Summary
    - add experimental turn/start.environments params for per-turn
    environment id + cwd selections
    - pass selections through core protocol ops and resolve them with
    EnvironmentManager before TurnContext creation
    - treat omitted selections as default behavior, empty selections as no
    environment, and non-empty selections as first environment/cwd as the
    turn primary
    
    ## Testing
    - ran `just fmt`
    - ran `just write-app-server-schema`
    - not run: unit tests for this stacked PR
    
    ---------
    
    Co-authored-by: Codex <noreply@openai.com>
  • Update models.json (#18586)
    - Replace the active models-manager catalog with the deleted core
    catalog contents.
    - Replace stale hardcoded test model slugs with current bundled model
    slugs.
    - Keep this as a stacked change on top of the cleanup PR.
  • feat(sandbox): add glob deny-read platform enforcement (#18096)
    ## Summary
    - adds macOS Seatbelt deny rules for unreadable glob patterns
    - expands unreadable glob matches on Linux and masks them in bwrap,
    including canonical symlink targets
    - keeps Linux glob expansion robust when `rg` is unavailable in minimal
    or Bazel test environments
    - adds sandbox integration coverage that runs `shell` and `exec_command`
    with a `**/*.env = none` policy and verifies the secret contents do not
    reach the model
    
    ## Linux glob expansion
    
    ```text
    Prefer:   rg --files --hidden --no-ignore --glob <pattern> -- <search-root>
    Fallback: internal globset walker when rg is not installed
    Failure:  any other rg failure aborts sandbox construction
    ```
    
    ```
    [permissions.workspace.filesystem]
    glob_scan_max_depth = 2
    
    [permissions.workspace.filesystem.":project_roots"]
    "**/*.env" = "none"
    ```
    
    
    This keeps the common path fast without making sandbox construction
    depend on an ambient `rg` binary. If `rg` is present but fails for
    another reason, the sandbox setup fails closed instead of silently
    omitting deny-read masks.
    
    ## Platform support
    - macOS: subprocess sandbox enforcement is handled by Seatbelt regex
    deny rules
    - Linux: subprocess sandbox enforcement is handled by expanding existing
    glob matches and masking them in bwrap
    - Windows: policy/config/direct-tool glob support is already on `main`
    from #15979; Windows subprocess sandbox paths continue to fail closed
    when unreadable split filesystem carveouts require runtime enforcement,
    rather than silently running unsandboxed
    
    ## Stack
    1. #15979 - merged: cross-platform glob deny-read
    policy/config/direct-tool support for macOS, Linux, and Windows
    2. This PR - macOS/Linux subprocess sandbox enforcement plus Windows
    fail-closed clarification
    3. #17740 - managed deny-read requirements
    
    ## Verification
    - Added integration coverage for `shell` and `exec_command` glob
    deny-read enforcement
    - `cargo check -p codex-sandboxing -p codex-linux-sandbox --tests`
    - `cargo check -p codex-core --test all`
    - `cargo clippy -p codex-linux-sandbox -p codex-sandboxing --tests`
    - `just bazel-lock-check`
    
    ---------
    
    Co-authored-by: Codex <noreply@openai.com>
  • Add server-level approval defaults for custom MCP servers (#17843)
    ## Summary
    - Add `default_tools_approval_mode` support for custom MCP server
    configs, matching the existing `codex_apps` behavior
    - Apply approval precedence as per-tool override, then server default,
    then `auto`
    - Update config serialization, CLI display, schema generation, docs, and
    tests
    
    ## Testing
    - `cargo check -p codex-config`
    - `cargo check -p codex-core`
    - `just write-config-schema`
    - `just fmt`
    - `cargo test -p codex-config`
    - Targeted `codex-core` tests for config parsing, config writes, and MCP
    approval precedence
    - `just fix -p codex-config -p codex-core`
  • [1/8] Add MCP server environment config (#18085)
    ## Summary
    - Add an MCP server environment setting with local as the default.
    - Thread the default through config serialization, schema generation,
    and existing config fixtures.
    
    ## Stack
    ```text
    o  #18027 [8/8] Fail exec client operations after disconnect
    │
    o  #18025 [7/8] Cover MCP stdio tests with executor placement
    │
    o  #18089 [6/8] Wire remote MCP stdio through executor
    │
    o  #18088 [5/8] Add executor process transport for MCP stdio
    │
    o  #18087 [4/8] Abstract MCP stdio server launching
    │
    o  #18020 [3/8] Add pushed exec process events
    │
    o  #18086 [2/8] Support piped stdin in exec process API
    │
    @  #18085 [1/8] Add MCP server environment config
    │
    o  main
    ```
    
    Co-authored-by: Codex <noreply@openai.com>
  • [mcp] Add dummy tools for previously called but currently missing tools. (#17853)
    - [x] Add dummy tools for previously called but currently missing tools.
    Currently supporting MCP tools only.
  • chore: clean up argument-comment lint and roll out all-target CI on macOS (#16054)
    ## Why
    
    `argument-comment-lint` was green in CI even though the repo still had
    many uncommented literal arguments. The main gap was target coverage:
    the repo wrapper did not force Cargo to inspect test-only call sites, so
    examples like the `latest_session_lookup_params(true, ...)` tests in
    `codex-rs/tui_app_server/src/lib.rs` never entered the blocking CI path.
    
    This change cleans up the existing backlog, makes the default repo lint
    path cover all Cargo targets, and starts rolling that stricter CI
    enforcement out on the platform where it is currently validated.
    
    ## What changed
    
    - mechanically fixed existing `argument-comment-lint` violations across
    the `codex-rs` workspace, including tests, examples, and benches
    - updated `tools/argument-comment-lint/run-prebuilt-linter.sh` and
    `tools/argument-comment-lint/run.sh` so non-`--fix` runs default to
    `--all-targets` unless the caller explicitly narrows the target set
    - fixed both wrappers so forwarded cargo arguments after `--` are
    preserved with a single separator
    - documented the new default behavior in
    `tools/argument-comment-lint/README.md`
    - updated `rust-ci` so the macOS lint lane keeps the plain wrapper
    invocation and therefore enforces `--all-targets`, while Linux and
    Windows temporarily pass `-- --lib --bins`
    
    That temporary CI split keeps the stricter all-targets check where it is
    already cleaned up, while leaving room to finish the remaining Linux-
    and Windows-specific target-gated cleanup before enabling
    `--all-targets` on those runners. The Linux and Windows failures on the
    intermediate revision were caused by the wrapper forwarding bug, not by
    additional lint findings in those lanes.
    
    ## Validation
    
    - `bash -n tools/argument-comment-lint/run.sh`
    - `bash -n tools/argument-comment-lint/run-prebuilt-linter.sh`
    - shell-level wrapper forwarding check for `-- --lib --bins`
    - shell-level wrapper forwarding check for `-- --tests`
    - `just argument-comment-lint`
    - `cargo test` in `tools/argument-comment-lint`
    - `cargo test -p codex-terminal-detection`
    
    ## Follow-up
    
    - Clean up remaining Linux-only target-gated callsites, then switch the
    Linux lint lane back to the plain wrapper invocation.
    - Clean up remaining Windows-only target-gated callsites, then switch
    the Windows lint lane back to the plain wrapper invocation.
  • Split features into codex-features crate (#15253)
    - Split the feature system into a new `codex-features` crate.
    - Cut `codex-core` and workspace consumers over to the new config and
    warning APIs.
    
    Co-authored-by: Ahmed Ibrahim <219906144+aibrahim-oai@users.noreply.github.com>
    Co-authored-by: Codex <noreply@openai.com>
  • config: enforce enterprise feature requirements (#13388)
    ## Why
    
    Enterprises can already constrain approvals, sandboxing, and web search
    through `requirements.toml` and MDM, but feature flags were still only
    configurable as managed defaults. That meant an enterprise could suggest
    feature values, but it could not actually pin them.
    
    This change closes that gap and makes enterprise feature requirements
    behave like the other constrained settings. The effective feature set
    now stays consistent with enterprise requirements during config load,
    when config writes are validated, and when runtime code mutates feature
    flags later in the session.
    
    It also tightens the runtime API for managed features. `ManagedFeatures`
    now follows the same constraint-oriented shape as `Constrained<T>`
    instead of exposing panic-prone mutation helpers, and production code
    can no longer construct it through an unconstrained `From<Features>`
    path.
    
    The PR also hardens the `compact_resume_fork` integration coverage on
    Windows. After the feature-management changes,
    `compact_resume_after_second_compaction_preserves_history` was
    overflowing the libtest/Tokio thread stacks on Windows, so the test now
    uses an explicit larger-stack harness as a pragmatic mitigation. That
    may not be the ideal root-cause fix, and it merits a parallel
    investigation into whether part of the async future chain should be
    boxed to reduce stack pressure instead.
    
    ## What Changed
    
    Enterprises can now pin feature values in `requirements.toml` with the
    requirements-side `features` table:
    
    ```toml
    [features]
    personality = true
    unified_exec = false
    ```
    
    Only canonical feature keys are allowed in the requirements `features`
    table; omitted keys remain unconstrained.
    
    - Added a requirements-side pinned feature map to
    `ConfigRequirementsToml`, threaded it through source-preserving
    requirements merge and normalization in `codex-config`, and made the
    TOML surface use `[features]` (while still accepting legacy
    `[feature_requirements]` for compatibility).
    - Exposed `featureRequirements` from `configRequirements/read`,
    regenerated the JSON/TypeScript schema artifacts, and updated the
    app-server README.
    - Wrapped the effective feature set in `ManagedFeatures`, backed by
    `ConstrainedWithSource<Features>`, and changed its API to mirror
    `Constrained<T>`: `can_set(...)`, `set(...) -> ConstraintResult<()>`,
    and result-returning `enable` / `disable` / `set_enabled` helpers.
    - Removed the legacy-usage and bulk-map passthroughs from
    `ManagedFeatures`; callers that need those behaviors now mutate a plain
    `Features` value and reapply it through `set(...)`, so the constrained
    wrapper remains the enforcement boundary.
    - Removed the production loophole for constructing unconstrained
    `ManagedFeatures`. Non-test code now creates it through the configured
    feature-loading path, and `impl From<Features> for ManagedFeatures` is
    restricted to `#[cfg(test)]`.
    - Rejected legacy feature aliases in enterprise feature requirements,
    and return a load error when a pinned combination cannot survive
    dependency normalization.
    - Validated config writes against enterprise feature requirements before
    persisting changes, including explicit conflicting writes and
    profile-specific feature states that normalize into invalid
    combinations.
    - Updated runtime and TUI feature-toggle paths to use the constrained
    setter API and to persist or apply the effective post-constraint value
    rather than the requested value.
    - Updated the `core_test_support` Bazel target to include the bundled
    core model-catalog fixtures in its runtime data, so helper code that
    resolves `core/models.json` through runfiles works in remote Bazel test
    environments.
    - Renamed the core config test coverage to emphasize that effective
    feature values are normalized at runtime, while conflicting persisted
    config writes are rejected.
    - Ran `compact_resume_after_second_compaction_preserves_history` inside
    an explicit 8 MiB test thread and Tokio runtime worker stack, following
    the existing larger-stack integration-test pattern, to keep the Windows
    `compact_resume_fork` test slice from aborting while a parallel
    investigation continues into whether some of the underlying async
    futures should be boxed.
    
    ## Verification
    
    - `cargo test -p codex-config`
    - `cargo test -p codex-core feature_requirements_ -- --nocapture`
    - `cargo test -p codex-core
    load_requirements_toml_produces_expected_constraints -- --nocapture`
    - `cargo test -p codex-core
    compact_resume_after_second_compaction_preserves_history -- --nocapture`
    - `cargo test -p codex-core compact_resume_fork -- --nocapture`
    - Re-ran the built `codex-core` `tests/all` binary with
    `RUST_MIN_STACK=262144` for
    `compact_resume_after_second_compaction_preserves_history` to confirm
    the explicit-stack harness fixes the deterministic low-stack repro.
    - `cargo test -p codex-core`
    - This still fails locally in unrelated integration areas that expect
    the `codex` / `test_stdio_server` binaries or hit existing `search_tool`
    wiremock mismatches.
    
    ## Docs
    
    `developers.openai.com/codex` should document the requirements-side
    `[features]` table for enterprise and MDM-managed configuration,
    including that it only accepts canonical feature keys and that
    conflicting config writes are rejected.
  • chore: remove codex-core public protocol/shell re-exports (#12432)
    ## Why
    
    `codex-rs/core/src/lib.rs` re-exported a broad set of types and modules
    from `codex-protocol` and `codex-shell-command`. That made it easy for
    workspace crates to import those APIs through `codex-core`, which in
    turn hides dependency edges and makes it harder to reduce compile-time
    coupling over time.
    
    This change removes those public re-exports so call sites must import
    from the source crates directly. Even when a crate still depends on
    `codex-core` today, this makes dependency boundaries explicit and
    unblocks future work to drop `codex-core` dependencies where possible.
    
    ## What Changed
    
    - Removed public re-exports from `codex-rs/core/src/lib.rs` for:
    - `codex_protocol::protocol` and related protocol/model types (including
    `InitialHistory`)
      - `codex_protocol::config_types` (`protocol_config_types`)
    - `codex_shell_command::{bash, is_dangerous_command, is_safe_command,
    parse_command, powershell}`
    - Migrated workspace Rust call sites to import directly from:
      - `codex_protocol::protocol`
      - `codex_protocol::config_types`
      - `codex_protocol::models`
      - `codex_shell_command`
    - Added explicit `Cargo.toml` dependencies (`codex-protocol` /
    `codex-shell-command`) in crates that now import those crates directly.
    - Kept `codex-core` internal modules compiling by using `pub(crate)`
    aliases in `core/src/lib.rs` (internal-only, not part of the public
    API).
    - Updated the two utility crates that can already drop a `codex-core`
    dependency edge entirely:
      - `codex-utils-approval-presets`
      - `codex-utils-cli`
    
    ## Verification
    
    - `cargo test -p codex-utils-approval-presets`
    - `cargo test -p codex-utils-cli`
    - `cargo check --workspace --all-targets`
    - `just clippy`
  • feat: introduce Permissions (#11633)
    ## Why
    We currently carry multiple permission-related concepts directly on
    `Config` for shell/unified-exec behavior (`approval_policy`,
    `sandbox_policy`, `network`, `shell_environment_policy`,
    `windows_sandbox_mode`).
    
    Consolidating these into one in-memory struct makes permission handling
    easier to reason about and sets up the next step: supporting named
    permission profiles (`[permissions.PROFILE_NAME]`) without changing
    behavior now.
    
    This change is mostly mechanical: it updates existing callsites to go
    through `config.permissions`, but it does not yet refactor those
    callsites to take a single `Permissions` value in places where multiple
    permission fields are still threaded separately.
    
    This PR intentionally **does not** change the on-disk `config.toml`
    format yet and keeps compatibility with legacy config keys.
    
    ## What Changed
    - Introduced `Permissions` in `core/src/config/mod.rs`.
    - Added `Config::permissions` and moved effective runtime permission
    fields under it:
      - `approval_policy`
      - `sandbox_policy`
      - `network`
      - `shell_environment_policy`
      - `windows_sandbox_mode`
    - Updated config loading/building so these effective values are still
    derived from the same existing config inputs and constraints.
    - Updated Windows sandbox helpers/resolution to read/write via
    `permissions`.
    - Threaded the new field through all permission consumers across core
    runtime, app-server, CLI/exec, TUI, and sandbox summary code.
    - Updated affected tests to reference `config.permissions.*`.
    - Renamed the struct/field from
    `EffectivePermissions`/`effective_permissions` to
    `Permissions`/`permissions` and aligned variable naming accordingly.
    
    ## Verification
    - `just fix -p codex-core -p codex-tui -p codex-cli -p codex-app-server
    -p codex-exec -p codex-utils-sandbox-summary`
    - `cargo build -p codex-core -p codex-tui -p codex-cli -p
    codex-app-server -p codex-exec -p codex-utils-sandbox-summary`
  • feat: make sandbox read access configurable with ReadOnlyAccess (#11387)
    `SandboxPolicy::ReadOnly` previously implied broad read access and could
    not express a narrower read surface.
    This change introduces an explicit read-access model so we can support
    user-configurable read restrictions in follow-up work, while preserving
    current behavior today.
    
    It also ensures unsupported backends fail closed for restricted-read
    policies instead of silently granting broader access than intended.
    
    ## What
    
    - Added `ReadOnlyAccess` in protocol with:
      - `Restricted { include_platform_defaults, readable_roots }`
      - `FullAccess`
    - Updated `SandboxPolicy` to carry read-access configuration:
      - `ReadOnly { access: ReadOnlyAccess }`
      - `WorkspaceWrite { ..., read_only_access: ReadOnlyAccess }`
    - Preserved existing behavior by defaulting current construction paths
    to `ReadOnlyAccess::FullAccess`.
    - Threaded the new fields through sandbox policy consumers and call
    sites across `core`, `tui`, `linux-sandbox`, `windows-sandbox`, and
    related tests.
    - Updated Seatbelt policy generation to honor restricted read roots by
    emitting scoped read rules when full read access is not granted.
    - Added fail-closed behavior on Linux and Windows backends when
    restricted read access is requested but not yet implemented there
    (`UnsupportedOperation`).
    - Regenerated app-server protocol schema and TypeScript artifacts,
    including `ReadOnlyAccess`.
    
    ## Compatibility / rollout
    
    - Runtime behavior remains unchanged by default (`FullAccess`).
    - API/schema changes are in place so future config wiring can enable
    restricted read access without another policy-shape migration.
  • feat: support allowed_sandbox_modes in requirements.toml (#8298)
    This adds support for `allowed_sandbox_modes` in `requirements.toml` and
    provides legacy support for constraining sandbox modes in
    `managed_config.toml`. This is converted to `Constrained<SandboxPolicy>`
    in `ConfigRequirements` and applied to `Config` such that constraints
    are enforced throughout the harness.
    
    Note that, because `managed_config.toml` is deprecated, we do not add
    support for the new `external-sandbox` variant recently introduced in
    https://github.com/openai/codex/pull/8290. As noted, that variant is not
    supported in `config.toml` today, but can be configured programmatically
    via app server.
  • refactoring with_escalated_permissions to use SandboxPermissions instead (#7750)
    helpful in the future if we want more granularity for requesting
    escalated permissions:
    e.g when running in readonly sandbox, model can request to escalate to a
    sandbox that allows writes
  • Update defaults to gpt-5.1 (#6652)
    ## Summary
    - update documentation, example configs, and automation defaults to
    reference gpt-5.1 / gpt-5.1-codex
    - bump the CLI and core configuration defaults, model presets, and error
    messaging to the new models while keeping the model-family/tool coverage
    for legacy slugs
    - refresh tests, fixtures, and TUI snapshots so they expect the upgraded
    defaults
    
    ## Testing
    - `cargo test -p codex-core
    config::tests::test_precedence_fixture_with_gpt5_profile`
    
    
    ------
    [Codex
    Task](https://chatgpt.com/codex/tasks/task_i_6916c5b3c2b08321ace04ee38604fc6b)
  • Promote shared helpers for suite tests (#6460)
    ## Summary
    - add `TestCodex::submit_turn_with_policies` and extend the response
    helpers with reusable tool-call utilities
    - update the grep_files, read_file, list_dir, shell_serialization, and
    tools suites to rely on the shared helpers instead of local copies
    - make the list_dir helper return `anyhow::Result` so clippy no longer
    warns about `expect`
    
    ## Testing
    - `just fix -p codex-core`
    - `cargo test -p codex-core --test all
    suite::grep_files::grep_files_tool_collects_matches`
    - `cargo test -p codex-core
    suite::grep_files::grep_files_tool_collects_matches -- --ignored`
    (filter requests ignored tests so nothing runs, but the build stays
    clean)
    
    
    ------
    [Codex
    Task](https://chatgpt.com/codex/tasks/task_i_69112d53abac83219813cab4d7cb6446)
  • Avoid hang when tool's process spawns grandchild that shares stderr/stdout (#6575)
    We've received many reports of codex hanging when calling certain tools.
    [Here](https://github.com/openai/codex/issues/3204) is one example. This
    is likely a major cause. The problem occurs when
    `consume_truncated_output` waits for `stdout` and `stderr` to be closed
    once the child process terminates. This normally works fine, but it
    doesn't handle the case where the child has spawned grandchild processes
    that inherits `stdout` and `stderr`.
    
    The fix was originally written by @md-oai in [this
    PR](https://github.com/openai/codex/pull/1852), which has gone stale.
    I've copied the original fix (which looks sound to me) and added an
    integration test to prevent future regressions.
  • Move changing turn input functionalities to ConversationHistory (#5473)
    We are doing some ad-hoc logic while dealing with conversation history.
    Ideally, we shouldn't mutate `vec[responseitem]` manually at all and
    should depend on `ConversationHistory` for those changes.
    
    Those changes are:
    - Adding input to the history
    - Removing items from the history
    - Correcting history
    
    I am also adding some `error` logs for cases we shouldn't ideally face.
    For example, we shouldn't be missing `toolcalls` or `outputs`. We
    shouldn't hit `ContextWindowExceeded` while performing `compact`
    
    This refactor will give us granular control over our context management.
  • chore: align unified_exec (#5442)
    Align `unified_exec` with b implementation
  • Add ItemStarted/ItemCompleted events for UserInputItem (#5306)
    Adds a new ItemStarted event and delivers UserMessage as the first item
    type (more to come).
    
    
    Renames `InputItem` to `UserInput` considering we're using the `Item`
    suffix for actual items.
  • feat: feature flag (#4948)
    Add proper feature flag instead of having custom flags for everything.
    This is just for experimental/wip part of the code
    It can be used through CLI:
    ```bash
    codex --enable unified_exec --disable view_image_tool
    ```
    
    Or in the `config.toml`
    ```toml
    # Global toggles applied to every profile unless overridden.
    [features]
    apply_patch_freeform = true
    view_image_tool = false
    ```
    
    Follow-up:
    In a following PR, the goal is to have a default have `bundles` of
    features that we can associate to a model
  • bug: sandbox denied error logs (#4874)
    Check on STDOUT / STDERR or aggregated output for some logs when sanbox
    is denied
  • feat: list_dir tool (#4817)
    Add a tool to list_dir. It is useful because we can mark it as
    non-mutating and so use it in parallel
  • Simplify request body assertions (#4845)
    We'll have a lot more test like these
  • Make output assertions more explicit (#4784)
    Match using precise regexes.
  • Add helper for response created SSE events in tests (#4758)
    ## Summary
    - add a reusable `ev_response_created` helper that builds
    `response.created` SSE events for integration tests
    - update the exec and core integration suites to use the new helper
    instead of repeating manual JSON literals
    - keep the streaming fixtures consistent by relying on the shared helper
    in every touched test
    
    ## Testing
    - `just fmt`
    
    
    ------
    https://chatgpt.com/codex/tasks/task_i_68e1fe885bb883208aafffb94218da61
  • Use wait_for_event helpers in tests (#4753)
    ## Summary
    - replace manual event polling loops in several core test suites with
    the shared wait_for_event helpers
    - keep prior assertions intact by using closure captures for stateful
    expectations, including plan updates, patch lifecycles, and review flow
    checks
    - rely on wait_for_event_with_timeout where longer waits are required,
    simplifying timeout handling
    
    ## Testing
    - just fmt
    
    
    ------
    https://chatgpt.com/codex/tasks/task_i_68e1d58582d483208febadc5f90dd95e
  • Add truncation hint on truncated exec output. (#4740)
    When truncating output, add a hint of the total number of lines
  • feat: Freeform apply_patch with simple shell output (#4718)
    ## Summary
    This PR is an alternative approach to #4711, but instead of changing our
    storage, parses out shell calls in the client and reserializes them on
    the fly before we send them out as part of the request.
    
    What this changes:
    1. Adds additional serialization logic when the
    ApplyPatchToolType::Freeform is in use.
    2. Adds a --custom-apply-patch flag to enable this setting on a
    session-by-session basis.
    
    This change is delicate, but is not meant to be permanent. It is meant
    to be the first step in a migration:
    1. (This PR) Add in-flight serialization with config
    2. Update model_family default
    3. Update serialization logic to store turn outputs in a structured
    format, with logic to serialize based on model_family setting.
    4. Remove this rewrite in-flight logic.
    
    ## Test Plan
    - [x] Additional unit tests added
    - [x] Integration tests added
    - [x] Tested locally
  • fix: exec commands that blows up context window. (#4706)
    We truncate the output of exec commands to not blow the context window.
    However, some cases we weren't doing that. This caused reports of people
    with 76% context window left facing `input exceeded context window`
    which is weird.
  • Fix flaky test (#4672)
    This issue was due to the fact that the timeout is not always sufficient
    to have enough character for truncation + a race between synthetic
    timeout and process kill
  • chore: refactor tool handling (#4510)
    # Tool System Refactor
    
    - Centralizes tool definitions and execution in `core/src/tools/*`:
    specs (`spec.rs`), handlers (`handlers/*`), router (`router.rs`),
    registry/dispatch (`registry.rs`), and shared context (`context.rs`).
    One registry now builds the model-visible tool list and binds handlers.
    - Router converts model responses to tool calls; Registry dispatches
    with consistent telemetry via `codex-rs/otel` and unified error
    handling. Function, Local Shell, MCP, and experimental `unified_exec`
    all flow through this path; legacy shell aliases still work.
    - Rationale: reduce per‑tool boilerplate, keep spec/handler in sync, and
    make adding tools predictable and testable.
    
    Example: `read_file`
    - Spec: `core/src/tools/spec.rs` (see `create_read_file_tool`,
    registered by `build_specs`).
    - Handler: `core/src/tools/handlers/read_file.rs` (absolute `file_path`,
    1‑indexed `offset`, `limit`, `L#: ` prefixes, safe truncation).
    - E2E test: `core/tests/suite/read_file.rs` validates the tool returns
    the requested lines.
    
    ## Next steps:
    - Decompose `handle_container_exec_with_params` 
    - Add parallel tool calls