Enable --deny-warnings for cargo shear (#21616)

## Summary

In https://github.com/openai/codex/pull/21584, we disabled doctests for
crates that lack any doctests. We can enforce that property via `cargo
shear --deny-warnings`: crates that lack doctests will be flagged if
doctests are enabled, and crates with doctests will be flagged if
doctests are disabled.

A few additional notes:

- By adding `--deny-warnings`, `cargo shear` also flagged a number of
modules that were not reachable at all. Some of those have been removed.
- This PR removes a usage of `windows_modules!` (since `cargo shear` and
`rustfmt` couldn't see through it) in favor of simple `#[cfg(target_os =
"windows")]` macros. As a consequence, many of these files exhibit churn
in this PR, since they weren't being formatted by `rustfmt` at all on
main.
- Again, to make the code more analyzable, this PR also removes some
usages of `#[path = "cwd_junction.rs"]` in favor of a more standard
module structure. The bin sidecar structure is still retained, but,
e.g., `windows-sandbox-rs/src/bin/command_runner.rs‎` was moved to
`windows-sandbox-rs/src/bin/command_runner/main.rs`, and so on.

---------

Co-authored-by: Codex <noreply@openai.com>

codex-rs/protocol/Cargo.toml

@@ -21,7 +21,6 @@ codex-network-proxy = { workspace = true }
 codex-utils-absolute-path = { workspace = true }
 codex-utils-image = { workspace = true }
 codex-utils-string = { workspace = true }
-codex-utils-template = { workspace = true }
 encoding_rs = { workspace = true }
 globset = { workspace = true }
 icu_decimal = { workspace = true }
@@ -60,5 +59,4 @@ tempfile = { workspace = true }
 [package.metadata.cargo-shear]
 # Required because:
 # `icu_provider`: contains a required `sync` feature for `icu_decimal`
-# `strum`: as strum_macros in non-nightly builds
-ignored = ["icu_provider", "strum"]
+ignored = ["icu_provider"]