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P1: Separate force layout computation from visual state updates so clicking/searching/touring doesn't re-randomize node positions. Layout only recomputes when the graph data or filters change. P1: Restrict infrastructure-file skipping (index.md, log.md, etc.) to the wiki root level only. Nested files like concepts/index.md are now correctly treated as content articles. P2: Track ambiguous bare basenames in the wikilink resolution map. Duplicate basenames (e.g., a/foo.md and b/foo.md) are removed from the flat lookup so [[foo]] doesn't silently resolve to the wrong page. Also fixed: edge IDs now use stable source-target-type keys instead of array indices for proper React reconciliation. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>